Rice gene details
Searching for LOC_Os06g06360 [WRKY DNA-binding domain containing protein, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os06g06360.1 392 143 205 PF03106.7 WRKY
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  2
N22InfloresenceFC
  14
N22 Root FC
  -14
IR64 Flag-leaf FC
  5
IR64InfloresenceFC
  2
IR64 Root FC
  -3

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003677 DNA binding (RGAP)
2 GO:0005515 protein binding (RGAP)
3 GO:0003700 sequence-specific DNA binding transcription factor activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009409 response to cold  
2 GO:0009414 response to water deprivation  
3 GO:0009651 response to salt stress  
4 GO:0009751 response to salicylic acid stimulus  
5 GO:0009753 response to jasmonic acid stimulus  
6 GO:0007275 multicellular organismal development (RGAP)
7 GO:0009058 biosynthetic process (RGAP)
8 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
9 GO:0006950 response to stress (RGAP)
10 GO:0009607 response to biotic stimulus (RGAP)
11 GO:0008150 biological_process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005634 nucleus (RGAP)
2 GO:0009536 plastid (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007187 salicylic acid regimen (+)
2 EO:0007407 methyl jasmonate (+)
3 MCE:1000116 mild drought (+)
4 MCE:1000117 severe drought (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQAE17 grain number
2 AQGA003 amylose content
3 AQGA008 amylose content
4 AQGA022 gel consistency
5 AQGA026 gel consistency
6 CQX3 days to heading
7 AQFX001 days to heading
8 AQCV026 chalkiness of endosperm
9 AQCV027 chalkiness of endosperm
10 AQCV038 chalkiness of endosperm
11 AQCI009 phosphorus sensitivity
12 CQE43 ratooning ability
13 AQFU006 head rice
14 AQFU016 amylose content
15 AQFU018 alkali digestion
16 AQFU022 protein content
17 CQI6 sodium concentration
18 AQCY005 panicle number
19 AQCY026 panicle number
20 AQCQ017 1000-seed weight
21 AQY011 days to heading
22 AQY015 days to heading
23 CQAL10 chalkiness of endosperm
24 CQAL18 grain length to width ratio
25 CQAW18 tiller number
26 AQEN005 blast disease resistance
27 CQAW19 root number
28 AQEJ010 leaf length
29 AQEJ011 leaf length
30 AQEJ012 leaf width
31 AQEJ013 leaf width
32 AQEJ014 leaf length to width ratio
33 AQEJ015 leaf length to width ratio
34 AQEJ016 leaf length to width ratio
35 AQCU188 days to heading
36 AQFW092 leaf length
37 AQCF008 filled grain number
38 AQCF009 spikelet number
39 AQCF010 grain yield
40 AQCF019 filled grain number
41 AQCF020 spikelet number
42 AQCF021 grain yield
43 AQCF036 filled grain number
44 AQCF037 spikelet number
45 AQCF038 spikelet fertility
46 AQCF039 1000-seed weight
47 AQCF040 grain yield
48 AQGJ005 blast disease resistance
49 AQGJ023 blast disease resistance
50 AQEJ026 leaf width
51 AQEJ028 leaf width
52 CQAF3 amylose content
53 CQAF5 gel consistency
54 AQHR045 plant height
55 AQHR046 plant height
56 AQAI048 large vascular bundle number to leaf area ratio
57 AQDY078 panicle length
58 AQDY082 panicle length
59 AQDY083 panicle length

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 MCP:1000520 young inflorescence stage (-)
3 MCP:1000521 mature plant stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0006339 juvenile leaf (-)
2 PO:0006340 adult leaf (-)
3 PO:0009005 root (+)
4 PO:0009049 inflorescence (+)
5 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Nuruzzaman Mohammed; Sharoni Akhter Most; Satoh Kouji; Kumar Arvind; Leung Hei; Kikuchi Shoshi; Comparative transcriptome profiles of the WRKY gene family under control, hormone-treated, and drought conditions in near-isogenic rice lines reveal differential, tissue specific gene activation. Journal of plant physiology 2014:171
PMID [24189206]


Ramamoorthy Rengasamy; Jiang Shu-Ye; Kumar Nadimuthu; Venkatesh Prasanna Nori; Ramachandran Srinivasan; A comprehensive transcriptional profiling of the WRKY gene family in rice under various abiotic and phytohormone treatments. Plant & Cell Physiology 2008:49
PMID [18413358]


Liu Xiaoqiang; Bai Xianquan; Wang Xiujie; Chu Chengcai; OsWRKY71, a rice transcription factor, is involved in rice defense response. Journal of Plant Physiology 2007:164
PMID [16919842]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India