Rice gene details
Searching for LOC_Os06g07040 [OsIAA20 - Auxin-responsive Aux/IAA gene family member, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os06g07040.1 184 78 181 PF02309.8 AUX_IAA
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
 
N22InfloresenceFC
  2
N22 Root FC
  -1
IR64 Flag-leaf FC
 
IR64InfloresenceFC
  5
IR64 Root FC
  2

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003700 sequence-specific DNA binding transcription factor activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009416 response to light stimulus  
2 GO:0009733 response to auxin stimulus  
3 GO:0009735 response to cytokinin stimulus  
4 GO:0009737 response to abscisic acid stimulus  
5 GO:0009741 response to brassinosteroid stimulus  
6 GO:0008150 biological_process (RGAP)
7 GO:0009719 response to endogenous stimulus (RGAP)
8 GO:0009058 biosynthetic process (RGAP)
9 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005634 nucleus (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007024 aerobic environment (+)
2 EO:0007048 sodium chloride regimen (+)
3 EO:0007068 ethylene regimen (+)
4 EO:0007069 gibberellic acid regimen (+)
5 EO:0007070 indole acetic acid regimen (+)
6 EO:0007080 jasmonic acid regimen (+)
7 EO:0007105 abscisic acid regimen (+)
8 EO:0007162 continuous light regimen (+)
9 EO:0007180 2,4-dichlorophenoxyacetic acid (+)
10 EO:0007270 continuous dark (no light) regimen (+)
11 EO:0007290 kinetin regimen (+)
12 EO:0007404 drought environment (+)
13 MCE:1000063 epibrassinolide (+)
14 MCE:1000173 cadmium nutrient regimen (+)
15 MCE:1000203 dark regimen (+)
16 MCE:1000245 2′-amino-3′-methoxyflavone (PD98059) (+)
17 MCE:1000318 Nordihydroguaiaretic acid (NDGA) (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQAE17 grain number
2 AQGA003 amylose content
3 AQGA008 amylose content
4 AQGA022 gel consistency
5 AQGA026 gel consistency
6 CQX3 days to heading
7 AQCV026 chalkiness of endosperm
8 AQCV027 chalkiness of endosperm
9 AQCV038 chalkiness of endosperm
10 AQCI009 phosphorus sensitivity
11 CQE43 ratooning ability
12 AQFU006 head rice
13 AQFU016 amylose content
14 AQFU018 alkali digestion
15 AQFU022 protein content
16 CQI6 sodium concentration
17 AQCY005 panicle number
18 AQCY026 panicle number
19 AQCQ017 1000-seed weight
20 AQY011 days to heading
21 AQY015 days to heading
22 CQAL10 chalkiness of endosperm
23 CQAL18 grain length to width ratio
24 CQAW18 tiller number
25 AQEN005 blast disease resistance
26 CQAW19 root number
27 AQCU188 days to heading
28 AQFW092 leaf length
29 AQCF008 filled grain number
30 AQCF009 spikelet number
31 AQCF010 grain yield
32 AQCF019 filled grain number
33 AQCF020 spikelet number
34 AQCF021 grain yield
35 AQCF036 filled grain number
36 AQCF037 spikelet number
37 AQCF038 spikelet fertility
38 AQCF039 1000-seed weight
39 AQCF040 grain yield
40 AQGJ005 blast disease resistance
41 AQGJ023 blast disease resistance
42 AQEJ026 leaf width
43 AQEJ028 leaf width
44 CQAF3 amylose content
45 CQAF5 gel consistency
46 AQHR045 plant height
47 AQHR046 plant height
48 AQAI048 large vascular bundle number to leaf area ratio
49 AQDY078 panicle length
50 AQDY082 panicle length
51 AQDY083 panicle length
52 AQX010 secondary branch
53 AQAK003 grain yield per plant
54 AQBZ005 days to heading
55 AQGI115 biomass yield
56 AQGI150 biomass yield
57 AQGI171 biomass yield
58 AQGI260 total biomass yield
59 AQBP005 alkali digestion
60 AQAP056 brown planthopper resistance
61 AQCU046 spikelet fertility
62 AQCU065 plant height
63 AQCU125 plant height
64 AQE066 filled grain percentage
65 AQFW175 spikelet number
66 AQT015 seed length
67 AQBK042 seed number
68 AQBK045 seed set percent

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 PO:0007106 LP.03 three leaves visible (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000058 etiolated seedling (+)
2 PO:0000003 whole plant (+)
3 PO:0005052 plant callus (+)
4 PO:0008037 seedling (+)
5 PO:0009005 root (+)
6 PO:0009006 shoot system (+)
7 PO:0009025 vascular leaf (+)
8 PO:0009046 flower (+)
9 PO:0020032 plumule (+)
10 PO:0020033 coleoptile (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Ma Biao; Yin Cui-Cui; He Si-Jie; Lu Xiang; Zhang Wan-Ke; Lu Tie-Gang; Chen Shou-Yi; Zhang Jin-Song; Ethylene-induced inhibition of root growth requires abscisic acid function in rice (Oryza sativa L.) seedlings. PLoS genetics 2014:10
PMID [25330236]


2  Xu Yanxia; Zhang Saina; Guo Haipeng; Wang Suikang; Xu Ligen; Li Chuanyou; Qian Qian; Chen Fan; Geisler Markus; Qi Yanhua; Jiang De An; OsABCB14 functions in auxin transport and iron homeostasis in rice (Oryza sativa L.). The Plant journal : for cell and molecular biology 2014:79
PMID [24798203]


3  Zhao Feng Yun; Hu Fan; Zhang Shi Yong; Wang Kai; Zhang Cheng Ren; Liu Tao; MAPKs regulate root growth by influencing auxin signaling and cell cycle-related gene expression in cadmium-stressed rice. Environmental Science and Pollution Research International 2013:
PMID [23430734]


4  Du Hao; Wu Nai; Fu Jing; Wang Shiping; Li Xianghua; Xiao Jinghua; Xiong Lizhong; A GH3 family member, OsGH3-2, modulates auxin and abscisic acid levels and differentially affects drought and cold tolerance in rice. Journal of Experimental Botany 2012:
PMID [23112280]


5  Song Yaling; Wang Lei; Xiong Lizhong; Comprehensive expression profiling analysis of OsIAA gene family in developmental processes and in response to phytohormone and stress treatments. Planta 2009:229
PMID [19034497]


6  Jain Mukesh; Kaur Navneet; Garg Rohini; Thakur Jitendra K; Tyagi Akhilesh K; Khurana Jitendra P; Structure and expression analysis of early auxin-responsive Aux/IAA gene family in rice (Oryza sativa). Functional & Integrative Genomics 2006:6
PMID [16200395]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India