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Searching for LOC_Os06g07040
[OsIAA20 - Auxin-responsive Aux/IAA gene family member, expressed ] |
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Basic information [Pfam DB] |
Graphical representation of the protein domains |
S. No. |
Locus Id |
Protein Length |
Doman Start |
Domain End |
Pfam ID |
Domain Name |
1 |
LOC_Os06g07040.1 |
184 |
78 |
181 |
PF02309.8 |
AUX_IAA |
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The basic information is from RGAP and Pfam/InterPro databases |
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Gene model (download) 
IR64 N22
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Gene Expression
(RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC |
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N22InfloresenceFC |
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N22 Root FC |
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IR64 Flag-leaf FC |
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IR64InfloresenceFC |
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IR64 Root FC |
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Functional details
Molecular Function
S. No. |
GO Id |
GO Description |
1 |
GO:0003700 |
sequence-specific DNA binding transcription factor activity |
(RGAP) |
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Biological process
S. No. |
GO Id |
GO Description |
1 |
GO:0009416 |
response to light stimulus |
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2 |
GO:0009733 |
response to auxin stimulus |
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3 |
GO:0009735 |
response to cytokinin stimulus |
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4 |
GO:0009737 |
response to abscisic acid stimulus |
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5 |
GO:0009741 |
response to brassinosteroid stimulus |
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6 |
GO:0008150 |
biological_process |
(RGAP) |
7 |
GO:0009719 |
response to endogenous stimulus |
(RGAP) |
8 |
GO:0009058 |
biosynthetic process |
(RGAP) |
9 |
GO:0006139 |
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process |
(RGAP) |
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Cellular component
S. No. |
GO Id |
GO Description |
1 |
GO:0005634 |
nucleus |
(RGAP) |
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Environment details
Metabolic Pathway details
QTL details
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Plant developmental stage / tissue details
Plant development stage
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
MCP:1000518 |
seedling development stage |
(+) |
2 |
PO:0007106 |
LP.03 three leaves visible |
(+) |
Plant tissue/organ
Others
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
Not found |
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Trait details
Physical interaction details
Interaction type: protein-protein
Interaction type: protein-DNA
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Related publications [Sorted by year] |
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1 |
Ma Biao; Yin Cui-Cui; He Si-Jie; Lu Xiang; Zhang Wan-Ke; Lu Tie-Gang; Chen Shou-Yi; Zhang Jin-Song; Ethylene-induced inhibition of root growth requires abscisic acid function in rice (Oryza sativa L.) seedlings. PLoS genetics 2014:10
PMID [25330236]
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2 |
Xu Yanxia; Zhang Saina; Guo Haipeng; Wang Suikang; Xu Ligen; Li Chuanyou; Qian Qian; Chen Fan; Geisler Markus; Qi Yanhua; Jiang De An; OsABCB14 functions in auxin transport and iron homeostasis in rice (Oryza sativa L.). The Plant journal : for cell and molecular biology 2014:79
PMID [24798203]
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3 |
Zhao Feng Yun; Hu Fan; Zhang Shi Yong; Wang Kai; Zhang Cheng Ren; Liu Tao; MAPKs regulate root growth by influencing auxin signaling and cell cycle-related gene expression in cadmium-stressed rice. Environmental Science and Pollution Research International 2013:
PMID [23430734]
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4 |
Du Hao; Wu Nai; Fu Jing; Wang Shiping; Li Xianghua; Xiao Jinghua; Xiong Lizhong; A GH3 family member, OsGH3-2, modulates auxin and abscisic acid levels and differentially affects drought and cold tolerance in rice. Journal of Experimental Botany 2012:
PMID [23112280]
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5 |
Song Yaling; Wang Lei; Xiong Lizhong; Comprehensive expression profiling analysis of OsIAA gene family in developmental processes and in response to phytohormone and stress treatments. Planta 2009:229
PMID [19034497]
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6 |
Jain Mukesh; Kaur Navneet; Garg Rohini; Thakur Jitendra K; Tyagi Akhilesh K; Khurana Jitendra P; Structure and expression analysis of early auxin-responsive Aux/IAA gene family in rice (Oryza sativa). Functional & Integrative Genomics 2006:6
PMID [16200395]
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