Rice gene details
Searching for LOC_Os06g07210 [ribonucleoside-diphosphate reductase large subunit, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os06g07210.1 815 1 89 PF03477.8 ATP-cone
2 LOC_Os06g07210.1 815 141 213 PF00317.13 Ribonuc_red_lgN
3 LOC_Os06g07210.1 815 215 762 PF02867.7 Ribonuc_red_lgC
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -1
N22InfloresenceFC
  -1
N22 Root FC
  -1
IR64 Flag-leaf FC
  3
IR64InfloresenceFC
  1
IR64 Root FC
  -1

Functional details
Molecular Function
Not found
1 GO:0003824 catalytic activity (RGAP)
2 GO:0000166 nucleotide binding (RGAP)
Biological process
Not found
1 GO:0008150 biological_process (RGAP)
2 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
3 GO:0009058 biosynthetic process (RGAP)
4 GO:0006259 DNA metabolic process (RGAP)
5 GO:0008152 metabolic process (RGAP)
Cellular component
Not found
1 GO:0005737 cytoplasm (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007173 warm/hot temperature regimen (+)
2 EO:0007174 cold temperature regimen (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 P127-PWY ethanol fermentation to acetate

QTL details
S. No. QTL Id QTL Associated Trait
1 CQAE17 grain number
2 AQGA003 amylose content
3 AQGA008 amylose content
4 AQGA022 gel consistency
5 AQGA026 gel consistency
6 CQX3 days to heading
7 AQCV026 chalkiness of endosperm
8 AQCV027 chalkiness of endosperm
9 AQCV038 chalkiness of endosperm
10 AQCI009 phosphorus sensitivity
11 CQE43 ratooning ability
12 AQFU006 head rice
13 AQFU016 amylose content
14 AQFU018 alkali digestion
15 AQFU022 protein content
16 CQI6 sodium concentration
17 AQCQ017 1000-seed weight
18 AQY011 days to heading
19 AQY015 days to heading
20 CQAL10 chalkiness of endosperm
21 CQAL18 grain length to width ratio
22 CQAW18 tiller number
23 AQEN005 blast disease resistance
24 CQAW19 root number
25 AQCF008 filled grain number
26 AQCF009 spikelet number
27 AQCF010 grain yield
28 AQCF019 filled grain number
29 AQCF020 spikelet number
30 AQCF021 grain yield
31 AQCF036 filled grain number
32 AQCF037 spikelet number
33 AQCF038 spikelet fertility
34 AQCF039 1000-seed weight
35 AQCF040 grain yield
36 AQGJ005 blast disease resistance
37 AQGJ023 blast disease resistance
38 AQEJ026 leaf width
39 AQEJ028 leaf width
40 CQAF3 amylose content
41 CQAF5 gel consistency
42 AQAI048 large vascular bundle number to leaf area ratio
43 AQDY078 panicle length
44 AQDY082 panicle length
45 AQDY083 panicle length
46 AQX010 secondary branch
47 AQAK003 grain yield per plant
48 AQBZ005 days to heading
49 AQGI115 biomass yield
50 AQGI150 biomass yield
51 AQGI171 biomass yield
52 AQGI260 total biomass yield
53 AQBP005 alkali digestion
54 AQAP056 brown planthopper resistance
55 AQCU046 spikelet fertility
56 AQCU065 plant height
57 AQCU125 plant height
58 AQE066 filled grain percentage
59 AQFW175 spikelet number
60 AQT015 seed length
61 AQBK042 seed number
62 AQBK045 seed set percent
63 AQDR007 1000-seed weight
64 AQGM003 days to heading
65 AQGM022 spikelet fertility
66 AQGM028 1000-seed weight
67 AQGM034 grain yield

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000003 whole plant (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Jiang Quan; Mei Jie; Gong Xiao-Di; Xu Jian-Long; Zhang Jian-Hui; Teng Sheng; Lin Dong-Zhi; Dong Yan-Jun; Importance of the rice TCD9 encoding α subunit of chaperonin protein 60 (Cpn60α) for the chloroplast development during the early leaf stage. Plant science : an international journal of experimental plant biology 2014:215-216
PMID [24388528]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India