Rice gene details
Searching for LOC_Os06g08340 [AP2 domain containing protein ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os06g08340.1 179 6 57 PF00847.12 AP2
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
 
N22 Root FC
 
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
  1
IR64 Root FC
  1

Functional details
Molecular Function
Not found
1 GO:0003677 DNA binding (RGAP)
2 GO:0003700 sequence-specific DNA binding transcription factor activity (RGAP)
Biological process
Not found
1 GO:0009719 response to endogenous stimulus (RGAP)
2 GO:0007165 signal transduction (RGAP)
3 GO:0009058 biosynthetic process (RGAP)
4 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
Cellular component
Not found
1 GO:0005634 nucleus (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007024 aerobic environment (+)
2 EO:0007068 ethylene regimen (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQGA003 amylose content
2 AQGA008 amylose content
3 AQGA022 gel consistency
4 AQGA026 gel consistency
5 CQX3 days to heading
6 AQCI009 phosphorus sensitivity
7 CQE43 ratooning ability
8 AQFU006 head rice
9 AQFU016 amylose content
10 AQFU018 alkali digestion
11 AQFU022 protein content
12 CQI6 sodium concentration
13 AQEN005 blast disease resistance
14 CQAW19 root number
15 AQCF008 filled grain number
16 AQCF009 spikelet number
17 AQCF010 grain yield
18 AQCF019 filled grain number
19 AQCF020 spikelet number
20 AQCF021 grain yield
21 AQCF036 filled grain number
22 AQCF037 spikelet number
23 AQCF038 spikelet fertility
24 AQCF039 1000-seed weight
25 AQCF040 grain yield
26 AQGJ005 blast disease resistance
27 AQGJ023 blast disease resistance
28 CQAF3 amylose content
29 CQAF5 gel consistency
30 AQDY078 panicle length
31 AQDY082 panicle length
32 AQDY083 panicle length
33 AQX010 secondary branch
34 AQBP005 alkali digestion
35 AQAP056 brown planthopper resistance
36 AQCU046 spikelet fertility
37 AQCU065 plant height
38 AQCU125 plant height
39 AQE066 filled grain percentage
40 AQFW175 spikelet number
41 AQT015 seed length
42 AQBK042 seed number
43 AQBK045 seed set percent
44 AQDR007 1000-seed weight
45 AQBS012 days to maturity
46 AQEO002 spikelet number
47 CQE42 leaf height
48 AQCI002 phosphorus sensitivity
49 AQAP029 brown planthopper resistance
50 AQCU019 plant height
51 AQDZ008 culm thickness
52 AQEB003 1000-seed weight
53 AQEB007 1000-seed weight
54 AQEB012 1000-seed weight
55 AQDZ014 lodging incidence

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000058 etiolated seedling (+)
2 PO:0009005 root (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Ma Biao; Yin Cui-Cui; He Si-Jie; Lu Xiang; Zhang Wan-Ke; Lu Tie-Gang; Chen Shou-Yi; Zhang Jin-Song; Ethylene-induced inhibition of root growth requires abscisic acid function in rice (Oryza sativa L.) seedlings. PLoS genetics 2014:10
PMID [25330236]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India