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Searching for LOC_Os06g08790
[ORC1 - Putative origin recognition complex subunit 1, expressed ] |
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Basic information [Pfam DB] |
Graphical representation of the protein domains |
S. No. |
Locus Id |
Protein Length |
Doman Start |
Domain End |
Pfam ID |
Domain Name |
1 |
LOC_Os06g08790.1 |
815 |
162 |
209 |
PF00628.21 |
PHD |
2 |
LOC_Os06g08790.1 |
815 |
230 |
335 |
PF01426.10 |
BAH |
3 |
LOC_Os06g08790.1 |
815 |
463 |
672 |
PF00004.21 |
AAA |
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The basic information is from RGAP and Pfam/InterPro databases |
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Gene model (download) 
IR64 N22
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Gene Expression
(RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC |
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N22InfloresenceFC |
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N22 Root FC |
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IR64 Flag-leaf FC |
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IR64InfloresenceFC |
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IR64 Root FC |
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Functional details
Molecular Function
Biological process
Not found |
1 |
GO:0009058 |
biosynthetic process |
(RGAP) |
2 |
GO:0006139 |
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process |
(RGAP) |
3 |
GO:0006259 |
DNA metabolic process |
(RGAP) |
4 |
GO:0000003 |
reproduction |
(RGAP) |
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Cellular component
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Environment details
Metabolic Pathway details
QTL details
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Plant developmental stage / tissue details
Plant development stage
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
MCP:1000518 |
seedling development stage |
(+) |
Plant tissue/organ
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
PO:0008037 |
seedling |
(+) |
Others
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
Not found |
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Trait details
Physical interaction details
Interaction type: protein-protein
Interaction type: protein-DNA
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Related publications [Sorted by year] |
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1 |
Zhang Jie; Liu Xiaoqiang; Li Shuyu; Cheng Zhukuan; Li Chuanyou; The Rice Semi-Dwarf Mutant sd37, Caused by a Mutation in CYP96B4, Plays an Important Role in the Fine-Tuning of Plant Growth. PloS one 2014:9
PMID [24498428]
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