Rice gene details
Searching for LOC_Os06g08850 [cyclic nucleotide-gated ion channel 14, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os06g08850.1 686 123 389 PF00520.23 Ion_trans
2 LOC_Os06g08850.1 686 496 590 PF00027.21 cNMP_binding
3 LOC_Os06g08850.2 494 123 389 PF00520.23 Ion_trans
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -1
N22InfloresenceFC
  -1
N22 Root FC
  -2
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  1
IR64 Root FC
  1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0000166 nucleotide binding (RGAP)
2 GO:0005215 transporter activity (RGAP)
3 GO:0005515 protein binding (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009409 response to cold  
2 GO:0009617 response to bacterium  
3 GO:0009723 response to ethylene stimulus  
4 GO:0009733 response to auxin stimulus  
5 GO:0009735 response to cytokinin stimulus  
6 GO:0009737 response to abscisic acid stimulus  
7 GO:0006810 transport (RGAP)
8 GO:0009987 cellular process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0016020 membrane (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007068 ethylene regimen (+)
2 EO:0007070 indole acetic acid regimen (+)
3 EO:0007105 abscisic acid regimen (+)
4 EO:0007198 water environment (+)
5 EO:0007234 Pseudomonas fuscovaginae (+)
6 EO:0007257 Xanthomonas oryzae pv. oryzae (+)
7 EO:0007290 kinetin regimen (+)
8 EO:0007332 cold air temperature regimen (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQGA003 amylose content
2 AQGA008 amylose content
3 AQGA022 gel consistency
4 AQGA026 gel consistency
5 CQX3 days to heading
6 AQCI009 phosphorus sensitivity
7 CQE43 ratooning ability
8 AQFU006 head rice
9 AQFU016 amylose content
10 AQFU018 alkali digestion
11 AQFU022 protein content
12 CQI6 sodium concentration
13 AQEN005 blast disease resistance
14 CQAW19 root number
15 AQCF008 filled grain number
16 AQCF009 spikelet number
17 AQCF010 grain yield
18 AQCF019 filled grain number
19 AQCF020 spikelet number
20 AQCF021 grain yield
21 AQCF036 filled grain number
22 AQCF037 spikelet number
23 AQCF038 spikelet fertility
24 AQCF039 1000-seed weight
25 AQCF040 grain yield
26 AQGJ005 blast disease resistance
27 AQGJ023 blast disease resistance
28 CQAF3 amylose content
29 CQAF5 gel consistency
30 AQDY078 panicle length
31 AQDY082 panicle length
32 AQDY083 panicle length
33 AQX010 secondary branch
34 AQAP056 brown planthopper resistance
35 AQCU046 spikelet fertility
36 AQCU065 plant height
37 AQCU125 plant height
38 AQE066 filled grain percentage
39 AQFW175 spikelet number
40 AQT015 seed length
41 AQBK042 seed number
42 AQBK045 seed set percent
43 AQDR007 1000-seed weight
44 AQBS012 days to maturity
45 AQEO002 spikelet number
46 AQCI002 phosphorus sensitivity
47 AQAP029 brown planthopper resistance
48 AQCU019 plant height
49 AQDZ008 culm thickness
50 AQEB003 1000-seed weight
51 AQEB007 1000-seed weight
52 AQEB012 1000-seed weight
53 AQDZ014 lodging incidence
54 AQEK011 iron sensitivity
55 CQAM2 brown planthopper resistance
56 CQAM4 brown planthopper resistance
57 AQAK007 panicle number
58 CQAS74 seed set percent
59 AQAY003 aluminum sensitivity

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0007106 LP.03 three leaves visible (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Nawaz Zarqa; Kakar Kaleem Ullah; Saand Mumtaz A; Shu Qing-Yao; Cyclic nucleotide-gated ion channel gene family in rice, identification, characterization and experimental analysis of expression response to plant hormones, biotic and abiotic stresses. BMC genomics 2014:15
PMID [25280591]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India