Rice gene details
Searching for LOC_Os06g09450 [sucrose synthase, putative, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os06g09450.1 809 6 551 PF00862.11 Sucrose_synth
2 LOC_Os06g09450.1 809 554 719 PF00534.12 Glycos_transf_1
3 LOC_Os06g09450.2 809 6 551 PF00862.11 Sucrose_synth
4 LOC_Os06g09450.2 809 554 719 PF00534.12 Glycos_transf_1
5 LOC_Os06g09450.3 809 6 551 PF00862.11 Sucrose_synth
6 LOC_Os06g09450.3 809 554 719 PF00534.12 Glycos_transf_1
7 LOC_Os06g09450.4 809 6 551 PF00862.11 Sucrose_synth
8 LOC_Os06g09450.4 809 554 719 PF00534.12 Glycos_transf_1
9 LOC_Os06g09450.5 809 6 551 PF00862.11 Sucrose_synth
10 LOC_Os06g09450.5 809 554 719 PF00534.12 Glycos_transf_1
11 LOC_Os06g09450.6 809 6 551 PF00862.11 Sucrose_synth
12 LOC_Os06g09450.6 809 554 719 PF00534.12 Glycos_transf_1
13 LOC_Os06g09450.7 809 6 551 PF00862.11 Sucrose_synth
14 LOC_Os06g09450.7 809 554 719 PF00534.12 Glycos_transf_1
15 LOC_Os06g09450.8 804 6 551 PF00862.11 Sucrose_synth
16 LOC_Os06g09450.8 804 554 719 PF00534.12 Glycos_transf_1
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  -2
N22 Root FC
  4
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
  -1
IR64 Root FC
  2

Functional details
Molecular Function
Not found
1 GO:0016740 transferase activity (RGAP)
Biological process
Not found
1 GO:0009058 biosynthetic process (RGAP)
2 GO:0005975 carbohydrate metabolic process (RGAP)
3 GO:0009987 cellular process (RGAP)
4 GO:0008152 metabolic process (RGAP)
Cellular component
Not found
1 GO:0016020 membrane (RGAP)
2 GO:0005773 vacuole (RGAP)
3 GO:0005829 cytosol (RGAP)
4 GO:0005886 plasma membrane (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007068 ethylene regimen (+)
2 EO:0007105 abscisic acid regimen (+)
3 MCE:1000010 submergence stress (+)
4 MCE:1000016 polyethylene glycol (PEG) treatment (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 CHLOROPHYLL-SYN chlorophyllide a biosynthesis
2 PWY-3821 galactose degradation II
3 PWY-621 sucrose degradation III
4 SUCSYN-PWY sucrose biosynthesis

QTL details
S. No. QTL Id QTL Associated Trait
1 AQGA003 amylose content
2 AQGA008 amylose content
3 AQGA022 gel consistency
4 AQGA026 gel consistency
5 CQX3 days to heading
6 AQCI009 phosphorus sensitivity
7 CQE43 ratooning ability
8 AQFU006 head rice
9 AQFU016 amylose content
10 AQFU018 alkali digestion
11 AQFU022 protein content
12 CQI6 sodium concentration
13 AQEN005 blast disease resistance
14 CQAW19 root number
15 AQCF008 filled grain number
16 AQCF009 spikelet number
17 AQCF010 grain yield
18 AQCF019 filled grain number
19 AQCF020 spikelet number
20 AQCF021 grain yield
21 AQCF036 filled grain number
22 AQCF037 spikelet number
23 AQCF038 spikelet fertility
24 AQCF039 1000-seed weight
25 AQCF040 grain yield
26 AQGJ005 blast disease resistance
27 AQGJ023 blast disease resistance
28 CQAF3 amylose content
29 CQAF5 gel consistency
30 AQDY078 panicle length
31 AQDY082 panicle length
32 AQDY083 panicle length
33 AQX010 secondary branch
34 AQAP056 brown planthopper resistance
35 AQCU046 spikelet fertility
36 AQCU065 plant height
37 AQCU125 plant height
38 AQE066 filled grain percentage
39 AQFW175 spikelet number
40 AQT015 seed length
41 AQBK042 seed number
42 AQBK045 seed set percent
43 AQDR007 1000-seed weight
44 AQBS012 days to maturity
45 AQEO002 spikelet number
46 AQCI002 phosphorus sensitivity
47 AQAP029 brown planthopper resistance
48 AQCU019 plant height
49 AQDZ008 culm thickness
50 AQEB003 1000-seed weight
51 AQEB007 1000-seed weight
52 AQEB012 1000-seed weight
53 AQDZ014 lodging incidence
54 AQEK011 iron sensitivity
55 CQAM2 brown planthopper resistance
56 CQAM4 brown planthopper resistance
57 AQAK007 panicle number
58 CQAS74 seed set percent
59 AQAY003 aluminum sensitivity

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000211 1-2 days post-fertilization stage (+)
2 MCP:1000212 3-4 days post-anthesis stage (+)
3 MCP:1000213 5-6 days post-anthesis stage (+)
4 MCP:1000214 7-8 days post-anthesis stage (+)
5 MCP:1000215 9-10 days post-anthesis stage (+)
6 MCP:1000216 11-12 days post-fertilization stage (+)
7 MCP:1000217 13-15 days post-fertilization stage (+)
8 MCP:1000518 seedling development stage (+)
9 PO:0007065 LP.05 five leaves visible (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009010 seed (+)
2 PO:0009072 ovary (+)
3 PO:0009088 seed coat (+)
4 PO:0009089 endosperm (+)
5 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Du Hao; Chang Yu; Huang Fei; Xiong Lizhong; GID1 modulates stomatal response and submergence tolerance involving ABA and GA signaling in rice. Journal of integrative plant biology 2014:
PMID [25418692]


2  Wei Shuya; Hu Wei; Deng Xiaomin; Zhang Yingying; Liu Xiaodong; Zhao Xudong; Luo Qingchen; Jin Zhengyi; Li Yin; Zhou Shiyi; Sun Tao; Wang Lianzhe; Yang Guangxiao; He Guangyuan; A rice calcium-dependent protein kinase OsCPK9 positively regulates drought stress tolerance and spikelet fertility. BMC plant biology 2014:14
PMID [24884869]


3  Cho Jung-Il; Kim Hyun-Bi; Kim Chi-Yeol; Hahn Tae-Ryong; Jeon Jong-Seong; Identification and characterization of the duplicate rice sucrose synthase genes OsSUS5 and OsSUS7 which are associated with the plasma membrane. Molecules and Cells 2011:
PMID [21533550]


4  Fukao Takeshi; Xu Kenong; Ronald Pamela C; Bailey-Serres Julia; A variable cluster of ethylene response factor-like genes regulates metabolic and developmental acclimation responses to submergence in rice. The Plant Cell 2006:18
PMID [16816135]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India