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Searching for LOC_Os06g09450
[sucrose synthase, putative, expressed ] |
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Basic information [Pfam DB] |
Graphical representation of the protein domains |
S. No. |
Locus Id |
Protein Length |
Doman Start |
Domain End |
Pfam ID |
Domain Name |
1 |
LOC_Os06g09450.1 |
809 |
6 |
551 |
PF00862.11 |
Sucrose_synth |
2 |
LOC_Os06g09450.1 |
809 |
554 |
719 |
PF00534.12 |
Glycos_transf_1 |
3 |
LOC_Os06g09450.2 |
809 |
6 |
551 |
PF00862.11 |
Sucrose_synth |
4 |
LOC_Os06g09450.2 |
809 |
554 |
719 |
PF00534.12 |
Glycos_transf_1 |
5 |
LOC_Os06g09450.3 |
809 |
6 |
551 |
PF00862.11 |
Sucrose_synth |
6 |
LOC_Os06g09450.3 |
809 |
554 |
719 |
PF00534.12 |
Glycos_transf_1 |
7 |
LOC_Os06g09450.4 |
809 |
6 |
551 |
PF00862.11 |
Sucrose_synth |
8 |
LOC_Os06g09450.4 |
809 |
554 |
719 |
PF00534.12 |
Glycos_transf_1 |
9 |
LOC_Os06g09450.5 |
809 |
6 |
551 |
PF00862.11 |
Sucrose_synth |
10 |
LOC_Os06g09450.5 |
809 |
554 |
719 |
PF00534.12 |
Glycos_transf_1 |
11 |
LOC_Os06g09450.6 |
809 |
6 |
551 |
PF00862.11 |
Sucrose_synth |
12 |
LOC_Os06g09450.6 |
809 |
554 |
719 |
PF00534.12 |
Glycos_transf_1 |
13 |
LOC_Os06g09450.7 |
809 |
6 |
551 |
PF00862.11 |
Sucrose_synth |
14 |
LOC_Os06g09450.7 |
809 |
554 |
719 |
PF00534.12 |
Glycos_transf_1 |
15 |
LOC_Os06g09450.8 |
804 |
6 |
551 |
PF00862.11 |
Sucrose_synth |
16 |
LOC_Os06g09450.8 |
804 |
554 |
719 |
PF00534.12 |
Glycos_transf_1 |
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The basic information is from RGAP and Pfam/InterPro databases |
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Gene model (download) 
IR64 N22
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Gene Expression
(RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC |
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N22InfloresenceFC |
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N22 Root FC |
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IR64 Flag-leaf FC |
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IR64InfloresenceFC |
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IR64 Root FC |
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Functional details
Molecular Function
Not found |
1 |
GO:0016740 |
transferase activity |
(RGAP) |
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Biological process
Cellular component
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Environment details
S. No. |
EO Id |
EO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
EO:0007068 |
ethylene regimen |
(+) |
2 |
EO:0007105 |
abscisic acid regimen |
(+) |
3 |
MCE:1000010 |
submergence stress |
(+) |
4 |
MCE:1000016 |
polyethylene glycol (PEG) treatment |
(+) |
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Metabolic Pathway details
QTL details
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Plant developmental stage / tissue details
Plant development stage
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
MCP:1000211 |
1-2 days post-fertilization stage |
(+) |
2 |
MCP:1000212 |
3-4 days post-anthesis stage |
(+) |
3 |
MCP:1000213 |
5-6 days post-anthesis stage |
(+) |
4 |
MCP:1000214 |
7-8 days post-anthesis stage |
(+) |
5 |
MCP:1000215 |
9-10 days post-anthesis stage |
(+) |
6 |
MCP:1000216 |
11-12 days post-fertilization stage |
(+) |
7 |
MCP:1000217 |
13-15 days post-fertilization stage |
(+) |
8 |
MCP:1000518 |
seedling development stage |
(+) |
9 |
PO:0007065 |
LP.05 five leaves visible |
(+) |
Plant tissue/organ
Others
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
Not found |
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Trait details
Physical interaction details
Interaction type: protein-protein
Interaction type: protein-DNA
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Related publications [Sorted by year] |
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1 |
Du Hao; Chang Yu; Huang Fei; Xiong Lizhong; GID1 modulates stomatal response and submergence tolerance involving ABA and GA signaling in rice. Journal of integrative plant biology 2014:
PMID [25418692]
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2 |
Wei Shuya; Hu Wei; Deng Xiaomin; Zhang Yingying; Liu Xiaodong; Zhao Xudong; Luo Qingchen; Jin Zhengyi; Li Yin; Zhou Shiyi; Sun Tao; Wang Lianzhe; Yang Guangxiao; He Guangyuan; A rice calcium-dependent protein kinase OsCPK9 positively regulates drought stress tolerance and spikelet fertility. BMC plant biology 2014:14
PMID [24884869]
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3 |
Cho Jung-Il; Kim Hyun-Bi; Kim Chi-Yeol; Hahn Tae-Ryong; Jeon Jong-Seong; Identification and characterization of the duplicate rice sucrose synthase genes OsSUS5 and OsSUS7 which are associated with the plasma membrane. Molecules and Cells 2011:
PMID [21533550]
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4 |
Fukao Takeshi; Xu Kenong; Ronald Pamela C; Bailey-Serres Julia; A variable cluster of ethylene response factor-like genes regulates metabolic and developmental acclimation responses to submergence in rice. The Plant Cell 2006:18
PMID [16816135]
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