Rice gene details
Searching for LOC_Os06g10880 [bZIP transcription factor, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os06g10880.1 325 244 300 PF00170.13 bZIP_1
2 LOC_Os06g10880.2 325 244 300 PF00170.13 bZIP_1
3 LOC_Os06g10880.3 219 138 194 PF00170.13 bZIP_1
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  2
N22InfloresenceFC
  -1
N22 Root FC
  4
IR64 Flag-leaf FC
  -2
IR64InfloresenceFC
  2
IR64 Root FC
  3

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003677 DNA binding  
2 GO:0016563 transcription activator activity  
3 GO:0043565 sequence-specific DNA binding  
4 GO:0003677 DNA binding (RGAP)
5 GO:0005515 protein binding (RGAP)
6 GO:0003700 sequence-specific DNA binding transcription factor activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0006970 response to osmotic stress  
2 GO:0006979 response to oxidative stress  
3 GO:0009409 response to cold  
4 GO:0009414 response to water deprivation  
5 GO:0009620 response to fungus  
6 GO:0009628 response to abiotic stimulus  
7 GO:0009651 response to salt stress  
8 GO:0009725 response to hormone stimulus  
9 GO:0009733 response to auxin stimulus  
10 GO:0009737 response to abscisic acid stimulus  
11 GO:0009739 response to gibberellin stimulus  
12 GO:0009753 response to jasmonic acid stimulus  
13 GO:0009719 response to endogenous stimulus (RGAP)
14 GO:0007165 signal transduction (RGAP)
15 GO:0006950 response to stress (RGAP)
16 GO:0009628 response to abiotic stimulus (RGAP)
17 GO:0009058 biosynthetic process (RGAP)
18 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
19 GO:0019725 cellular homeostasis (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005634 nucleus  
2 GO:0005634 nucleus (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007069 gibberellic acid regimen (+)
3 EO:0007070 indole acetic acid regimen (+)
4 EO:0007105 abscisic acid regimen (+)
5 EO:0007173 warm/hot temperature regimen (+)
6 EO:0007204 1-naphthaleneacetic acid (+)
7 EO:0007226 Magnaporthe grisea (+)
8 EO:0007332 cold air temperature regimen (+)
9 EO:0007404 drought environment (+)
10 EO:0007407 methyl jasmonate (+)
11 EO:0007409 brassinosteroid (+)
12 MCE:1000016 polyethylene glycol (PEG) treatment (+)
13 MCE:1000056 1-aminocyclopropane-1-carboxylic acid (+)
14 MCE:1000069 dessication/dehydration stress (+)
15 MCE:1000075 recovery treatment (+)
16 MCE:1000091 methyl viologen/paraquat (+)
17 MCE:1000241 D-glucose (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQX3 days to heading
2 CQE43 ratooning ability
3 CQI6 sodium concentration
4 AQEN005 blast disease resistance
5 CQAW19 root number
6 AQCF008 filled grain number
7 AQCF009 spikelet number
8 AQCF010 grain yield
9 AQCF019 filled grain number
10 AQCF020 spikelet number
11 AQCF021 grain yield
12 AQCF036 filled grain number
13 AQCF037 spikelet number
14 AQCF038 spikelet fertility
15 AQCF039 1000-seed weight
16 AQCF040 grain yield
17 AQGJ005 blast disease resistance
18 AQGJ023 blast disease resistance
19 AQDY078 panicle length
20 AQDY082 panicle length
21 AQDY083 panicle length
22 AQX010 secondary branch
23 AQT015 seed length
24 AQBK042 seed number
25 AQBK045 seed set percent
26 AQDR007 1000-seed weight
27 AQBS012 days to maturity
28 AQEO002 spikelet number
29 AQAP029 brown planthopper resistance
30 AQCU019 plant height
31 AQDZ008 culm thickness
32 AQEB003 1000-seed weight
33 AQEB007 1000-seed weight
34 AQEB012 1000-seed weight
35 AQDZ014 lodging incidence
36 AQEK011 iron sensitivity
37 CQAM2 brown planthopper resistance
38 CQAM4 brown planthopper resistance
39 CQAS74 seed set percent
40 AQAY003 aluminum sensitivity
41 AQF013 seed dormancy
42 AQF021 seed dormancy
43 AQF030 seed dormancy
44 AQF077 grain yield
45 AQF112 apiculus hair length
46 AQF113 apiculus hair length
47 CQAH25 seed dormancy
48 CQAH26 seed dormancy
49 CQAH27 seed dormancy
50 AQCY057 filled grain number
51 AQCY083 filled grain number
52 AQCY118 filled grain number
53 AQGI265 total biomass yield
54 AQFP014 culm length
55 AQEI022 leaf senescence
56 AQHF012 leaf area
57 AQHF036 leaf area
58 AQAK019 spikelet number
59 AQEJ085 root activity
60 AQEE023 gel consistency
61 AQFR031 seedling vigor
62 CQAG19 consistency viscosity
63 CQAG5 hot paste viscosity
64 CQAG9 cool paste viscosity
65 AQFU019 alkali digestion
66 AQFU027 seed length to width ratio

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000107 post-germination stage (+)
2 MCP:1000521 mature plant stage (+)
3 PO:0007013 BO.03 late boot stage (+)
4 PO:0007616 4 anthesis (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000003 whole plant (+)
2 PO:0006340 adult leaf (+)
3 PO:0008037 seedling (+)
4 PO:0009005 root (+)
5 PO:0009006 shoot system (+)
6 PO:0009010 seed (+)
7 PO:0009046 flower (+)
8 PO:0009047 stem (+)
9 PO:0009049 inflorescence (+)
10 PO:0020103 flag leaf (+)
11 PO:0020127 primary root (+)
12 PO:0025002 basal root (+)
13 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000012 survival rate (+)
2 MCT:1000039 water loss (+)
3 MCT:1000082 green cotyledon percentage (+)
4 TO:0000136 relative water content (+)
5 TO:0000227 root length (+)
6 TO:0000272 plant survivability (+)
7 TO:0000276 drought tolerance (+)
8 TO:0000326 leaf color (+)
9 TO:0000344 days to flower (+)
10 TO:0000430 germination rate (+)
11 TO:0000495 chlorophyll content (+)
12 TO:0000516 relative root length (+)
13 TO:0000652 leaf necrosis (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
S. No. Primary rice gene loci

Interacting rice gene loci

Experiment type

Id

Domain name/N or C term

Amino acid involved in interaction

Id

Domain name/N or C term

Bases
involved in interaction
Reference point cis-elements [PLACE Id]
1 LOC_Os06g10880 - --- - - - - S000120 Protein-DNA interaction analysis : Yeast one-hybrid analysis
2 LOC_Os06g10880 - --- - - - - S000134 Protein-DNA interaction analysis : Yeast one-hybrid analysis
3 LOC_Os06g10880 - - to - S000117 Protein-DNA interaction analysis : Yeast one-hybrid analysis
4 LOC_Os06g10880 - LOC_Os01g50100 - -523 to -265 TrSS S000015 Protein-DNA interaction analysis : Electrophoretic Mobility Shift Assay (EMSA)
5 LOC_Os06g10880 - LOC_Os08g29660 - -1023 to -872 TrSS Protein-DNA interaction analysis : Electrophoretic Mobility Shift Assay (EMSA)
      TSS - Transcriptional start site
TrSS - Translational start site
TSS-Pu - Putative TSS by cDNA alignment
TSS-P - Predicted TSS
Related publications [Sorted by year]

Guo Changkui; Ge Xiaochun; Ma Hong; The rice OsDIL gene plays a role in drought tolerance at vegetative and reproductive stages. Plant molecular biology 2013:82
PMID [23686450]


Yang Xi; Yang Ya-Nan; Xue Liang-Jiao; Zou Mei-Juan; Liu Jian-Jing; Chen Fan; Xue Hong-Wei; Rice ABI5-like1 Regulates ABA and Auxin Responses by Affecting the Expression of ABRE-Containing Genes. Plant Physiology 2011:
PMID [21546455]


Hossain Md Amir; Cho Jung-Il; Han Muho; Ahn Chul-Hyun; Jeon Jong-Seong; An Gynheung; Park Phun Bum; The ABRE-binding bZIP transcription factor OsABF2 is a positive regulator of abiotic stress and ABA signaling in rice. Journal of Plant Physiology 2010:167
PMID [20576316]


Jin Xiao Fen; Xiong Ai Sheng; Peng Ri He; Liu Jin Ge; Gao Feng; Chen Jian Min; Yao Quan Hong; OsAREB1, an ABRE-binding protein responding to ABA and glucose, has multiple functions in Arabidopsis. BMB Reports 2010:43
PMID [20132733]


Lu Guojun; Gao Chenxi; Zheng Xingnan; Han Bin; Identification of OsbZIP72 as a positive regulator of ABA response and drought tolerance in rice. Planta 2009:229
PMID [19048288]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India