Rice gene details
Searching for LOC_Os06g11290 [12-oxophytodienoate reductase, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os06g11290.1 381 15 346 PF00724.12 Oxidored_FMN
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  5
N22InfloresenceFC
  6
N22 Root FC
  -167
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  1
IR64 Root FC
  -2

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0016629 12-oxophytodienoate reductase activity  
2 GO:0003824 catalytic activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009753 response to jasmonic acid stimulus  
2 GO:0006950 response to stress (RGAP)
3 GO:0007275 multicellular organismal development (RGAP)
4 GO:0008152 metabolic process (RGAP)
5 GO:0008150 biological_process (RGAP)
6 GO:0009987 cellular process (RGAP)
7 GO:0006629 lipid metabolic process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005829 cytosol (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007080 jasmonic acid regimen (+)
2 EO:0007198 water environment (+)
3 EO:0007235 silicon nutrient regimen (+)
4 EO:0007279 Chilo suppressalis (+)
5 EO:0007373 mechanical damage (+)
6 MCE:1000038 cycloheximide (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 LIPAS-PWY triacylglycerol degradation

QTL details
S. No. QTL Id QTL Associated Trait
1 CQX3 days to heading
2 CQI6 sodium concentration
3 AQEN005 blast disease resistance
4 CQAW19 root number
5 AQCF008 filled grain number
6 AQCF009 spikelet number
7 AQCF010 grain yield
8 AQCF019 filled grain number
9 AQCF020 spikelet number
10 AQCF021 grain yield
11 AQCF036 filled grain number
12 AQCF037 spikelet number
13 AQCF038 spikelet fertility
14 AQCF039 1000-seed weight
15 AQCF040 grain yield
16 AQGJ005 blast disease resistance
17 AQGJ023 blast disease resistance
18 AQDY078 panicle length
19 AQDY082 panicle length
20 AQDY083 panicle length
21 AQX010 secondary branch
22 AQT015 seed length
23 AQBK042 seed number
24 AQBK045 seed set percent
25 AQDR007 1000-seed weight
26 AQBS012 days to maturity
27 AQEO002 spikelet number
28 AQAP029 brown planthopper resistance
29 AQCU019 plant height
30 AQDZ008 culm thickness
31 AQEB003 1000-seed weight
32 AQEB007 1000-seed weight
33 AQEB012 1000-seed weight
34 AQDZ014 lodging incidence
35 AQEK011 iron sensitivity
36 CQAM2 brown planthopper resistance
37 CQAM4 brown planthopper resistance
38 CQAS74 seed set percent
39 AQAY003 aluminum sensitivity
40 AQF013 seed dormancy
41 AQF021 seed dormancy
42 AQF030 seed dormancy
43 AQF077 grain yield
44 AQF112 apiculus hair length
45 AQF113 apiculus hair length
46 CQAH25 seed dormancy
47 CQAH26 seed dormancy
48 CQAH27 seed dormancy
49 AQCY057 filled grain number
50 AQCY083 filled grain number
51 AQCY118 filled grain number
52 AQGI265 total biomass yield
53 AQFP014 culm length
54 AQEI022 leaf senescence
55 AQHF012 leaf area
56 AQHF036 leaf area
57 AQAK019 spikelet number
58 AQEJ085 root activity
59 AQEE023 gel consistency
60 AQFR031 seedling vigor
61 CQAG19 consistency viscosity
62 CQAG5 hot paste viscosity
63 CQAG9 cool paste viscosity
64 AQFU019 alkali digestion
65 AQFU027 seed length to width ratio
66 CQP5 days to heading
67 AQX011 secondary branch

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000003 whole plant (+)
2 PO:0000005 cultured plant cell (+)
3 PO:0008037 seedling (+)
4 PO:0009006 shoot system (+)
5 PO:0009047 stem (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 TO:0000437 male sterility (+)
2 TO:0002668 jasmonic acid content (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Kim Yoon-Ha; Khan Abdul Latif; Waqas Muhammad; Jeong Hee-Jeong; Kim Duk-Hwan; Shin Jeong Sheop; Kim Jong-Guk; Yeon Myung-Hun; Lee In-Jung; Regulation of jasmonic acid biosynthesis by silicon application during physical injury to Oryza sativa L. Journal of plant research 2014:127
PMID [24840865]


Lu Jing; Ju Hongping; Zhou Guoxin; Zhu Chuanshu; Erb Matthias; Wang Xiaopeng; Wang Peng; Lou Yonggen; An EAR-motif-containing ERF transcription factor affects herbivore-induced signaling, defense and resistance in rice. The Plant Journal 2011:
PMID [21831212]


Tani Tomoyuki; Sobajima Hiroyuki; Okada Kazunori; Chujo Tetsuya; Arimura Shin-Ichi; Tsutsumi Nobuhiro; Nishimura Mikio; Seto Hideharu; Nojiri Hideaki; Yamane Hisakazu; Identification of the OsOPR7 gene encoding 12-oxophytodienoate reductase involved in the biosynthesis of jasmonic acid in rice. Planta 2008:227
PMID [17938955]


Sobajima Hiroyuki; Takeda Masayoshi; Sugimori Miho; Kobashi Nobuyuki; Kiribuchi Kyoko; Cho Eun-Min; Akimoto Chiharu; Yamaguchi Takeshi; Minami Eiichi; Shibuya Naoto; Schaller Florian; Weiler Elmar W; Yoshihara Teruhiko; Nishida Hiromi; Nojiri Hideaki; Omori Toshio; Nishiyama Makoto; Yamane Hisakazu; Cloning and characterization of a jasmonic acid-responsive gene encoding 12-oxophytodienoic acid reductase in suspension-cultured rice cells. Planta 2003:216
PMID [12569412]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India