Rice gene details
Searching for LOC_Os06g13810 [pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os06g13810.1 568 97 379 PF00365.12 PFK
2 LOC_Os06g13810.3 439 1 250 PF00365.12 PFK
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  -1
N22 Root FC
  -2
IR64 Flag-leaf FC
  3
IR64InfloresenceFC
  1
IR64 Root FC
  -2

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0016301 kinase activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0010044 response to aluminum ion  
2 GO:0005975 carbohydrate metabolic process (RGAP)
3 GO:0006091 generation of precursor metabolites and energy (RGAP)
4 GO:0009056 catabolic process (RGAP)
5 GO:0009987 cellular process (RGAP)
6 GO:0008150 biological_process (RGAP)
7 GO:0015979 photosynthesis (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0016020 membrane (RGAP)
2 GO:0005575 cellular_component (RGAP)
3 GO:0005618 cell wall (RGAP)
4 GO:0005829 cytosol (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 MCE:1000222 aluminium chloride regimen (AlCl3) (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 ARGSPECAT-PWY spermine biosynthesis
2 PWY-1042 glycolysis IV (plant cytosol)
3 PWY-3801 sucrose degradation to ethanol and lactate (anaerobic)

QTL details
S. No. QTL Id QTL Associated Trait
1 CQX3 days to heading
2 CQI6 sodium concentration
3 AQDY078 panicle length
4 AQDY082 panicle length
5 AQDY083 panicle length
6 AQX010 secondary branch
7 AQBK042 seed number
8 AQBK045 seed set percent
9 AQDR007 1000-seed weight
10 AQEO002 spikelet number
11 AQAP029 brown planthopper resistance
12 AQCU019 plant height
13 AQDZ008 culm thickness
14 AQEB003 1000-seed weight
15 AQEB007 1000-seed weight
16 AQEB012 1000-seed weight
17 AQDZ014 lodging incidence
18 AQEK011 iron sensitivity
19 CQAM2 brown planthopper resistance
20 CQAM4 brown planthopper resistance
21 AQFP014 culm length
22 CQAG19 consistency viscosity
23 CQAG5 hot paste viscosity
24 CQAG9 cool paste viscosity
25 AQFU019 alkali digestion
26 AQFU027 seed length to width ratio
27 CQP5 days to heading
28 AQX011 secondary branch
29 CQAO23 spikelet density
30 CQAO24 spikelet number
31 CQAX29 plant height
32 AQCU085 panicle length
33 AQCU135 leaf length
34 AQCU143 leaf width
35 AQCU155 spikelet number
36 AQCU187 days to heading
37 AQFE064 seed set percent
38 AQGM011 panicle length
39 CQAS69 panicle length
40 AQDK012 spikelet number
41 AQDK019 1000-seed weight
42 AQEF001 spikelet number
43 AQP008 primary branch
44 CQM1 embryosac abortion
45 CQAJ14 yield
46 AQFD009 tiller bud dormancy
47 CQAH28 seed dormancy
48 CQAH29 seed dormancy
49 CQAH30 seed dormancy
50 AQHP082 drought tolerance
51 AQBA018 brown planthopper resistance
52 AQBA020 brown planthopper resistance
53 AQCJ006 rice yellow mottle virus resistance
54 AQW009 brown planthopper resistance
55 AQW010 brown planthopper resistance
56 AQW011 brown planthopper resistance
57 AQCV039 chalkiness of endosperm
58 AQCW015 chlorophyll content
59 AQDZ003 lodging incidence
60 CQAF9 gelatinization temperature
61 AQCK009 days to heading
62 CQE44 days to heading
63 CQE45 carbon content
64 AQA023 root number
65 CQJ8 panicle number
66 CQAS66 plant height
67 AQFB004 seed dormancy

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009005 root (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Wang Zhan Qi; Xu Xiao Yan; Gong Qiao Qiao; Xie Chen; Fan Wei; Yang Jian Li; Lin Qi Shan; Zheng Shao Jian; Root proteome of rice studied by iTRAQ provides integrated insight into aluminum stress tolerance mechanisms in plants. Journal of proteomics 2014:98
PMID [24412201]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India