Rice gene details
Searching for LOC_Os06g14620 [ribonucleoside-diphosphate reductase small chain, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os06g14620.1 340 15 296 PF00268.13 Ribonuc_red_sm
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -2
N22InfloresenceFC
  1
N22 Root FC
  -3
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  1
IR64 Root FC
  -2

Functional details
Molecular Function
Not found
1 GO:0005488 binding (RGAP)
2 GO:0003824 catalytic activity (RGAP)
Biological process
Not found
1 GO:0006950 response to stress (RGAP)
2 GO:0006259 DNA metabolic process (RGAP)
3 GO:0009058 biosynthetic process (RGAP)
4 GO:0008152 metabolic process (RGAP)
5 GO:0007275 multicellular organismal development (RGAP)
6 GO:0008219 cell death (RGAP)
7 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
8 GO:0007049 cell cycle (RGAP)
Cellular component
Not found

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007173 warm/hot temperature regimen (+)
2 EO:0007174 cold temperature regimen (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 CITRULLINE-DEG-PWY citrulline degradation

QTL details
S. No. QTL Id QTL Associated Trait
1 CQX3 days to heading
2 CQI6 sodium concentration
3 AQDY078 panicle length
4 AQDY082 panicle length
5 AQDY083 panicle length
6 AQX010 secondary branch
7 AQBK042 seed number
8 AQBK045 seed set percent
9 AQDR007 1000-seed weight
10 AQEO002 spikelet number
11 AQAP029 brown planthopper resistance
12 AQCU019 plant height
13 AQDZ008 culm thickness
14 AQEB003 1000-seed weight
15 AQEB007 1000-seed weight
16 AQEB012 1000-seed weight
17 AQDZ014 lodging incidence
18 AQFP014 culm length
19 CQAG19 consistency viscosity
20 CQAG5 hot paste viscosity
21 CQAG9 cool paste viscosity
22 AQFU019 alkali digestion
23 AQFU027 seed length to width ratio
24 AQX011 secondary branch
25 CQAO23 spikelet density
26 CQAO24 spikelet number
27 CQAX29 plant height
28 AQCU085 panicle length
29 AQCU135 leaf length
30 AQCU143 leaf width
31 AQCU155 spikelet number
32 AQCU187 days to heading
33 AQFE064 seed set percent
34 AQGM011 panicle length
35 CQAS69 panicle length
36 AQDK012 spikelet number
37 AQDK019 1000-seed weight
38 AQEF001 spikelet number
39 AQP008 primary branch
40 CQM1 embryosac abortion
41 CQAJ14 yield
42 AQHP082 drought tolerance
43 AQBA018 brown planthopper resistance
44 AQBA020 brown planthopper resistance
45 AQCJ006 rice yellow mottle virus resistance
46 AQW009 brown planthopper resistance
47 AQW010 brown planthopper resistance
48 AQW011 brown planthopper resistance
49 AQCK009 days to heading
50 CQE44 days to heading
51 CQE45 carbon content
52 AQA023 root number
53 CQJ8 panicle number
54 CQAS66 plant height
55 AQFB004 seed dormancy
56 AQDY079 panicle length
57 AQDY080 panicle length
58 AQDY081 panicle length
59 CQX26 internode length
60 CQX29 internode length

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000003 whole plant (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Jiang Quan; Mei Jie; Gong Xiao-Di; Xu Jian-Long; Zhang Jian-Hui; Teng Sheng; Lin Dong-Zhi; Dong Yan-Jun; Importance of the rice TCD9 encoding α subunit of chaperonin protein 60 (Cpn60α) for the chloroplast development during the early leaf stage. Plant science : an international journal of experimental plant biology 2014:215-216
PMID [24388528]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India