Rice gene details
Searching for LOC_Os06g15420 [asparagine synthetase, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os06g15420.1 592 2 161 PF00310.13 GATase_2
2 LOC_Os06g15420.1 592 209 450 PF00733.13 Asn_synthase
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  1
N22 Root FC
  -4
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  1
IR64 Root FC
  -2

Functional details
Molecular Function
Not found
1 GO:0003824 catalytic activity (RGAP)
Biological process
Not found
1 GO:0009058 biosynthetic process (RGAP)
2 GO:0009987 cellular process (RGAP)
Cellular component
Not found
1 GO:0005829 cytosol (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 MCE:1000294 ammonium chloride (NH4) (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 ASPARAGINE-BIOSYNTHESIS asparagine biosynthesis I
2 ASPARAGINESYN-PWY asparagine biosynthesis III
3 PWY-1121 suberin biosynthesis
4 PWY-361 phenylpropanoid biosynthesis
5 PWY1F-FLAVSYN flavonoid biosynthesis

QTL details
S. No. QTL Id QTL Associated Trait
1 CQX3 days to heading
2 CQI6 sodium concentration
3 AQDY078 panicle length
4 AQDY082 panicle length
5 AQDY083 panicle length
6 AQX010 secondary branch
7 AQBK042 seed number
8 AQBK045 seed set percent
9 AQDR007 1000-seed weight
10 AQEO002 spikelet number
11 AQAP029 brown planthopper resistance
12 AQCU019 plant height
13 AQDZ008 culm thickness
14 AQEB003 1000-seed weight
15 AQEB007 1000-seed weight
16 AQEB012 1000-seed weight
17 AQDZ014 lodging incidence
18 AQFP014 culm length
19 CQAG19 consistency viscosity
20 CQAG5 hot paste viscosity
21 CQAG9 cool paste viscosity
22 AQFU019 alkali digestion
23 AQFU027 seed length to width ratio
24 AQX011 secondary branch
25 CQAO23 spikelet density
26 CQAO24 spikelet number
27 CQAX29 plant height
28 AQCU085 panicle length
29 AQCU135 leaf length
30 AQCU143 leaf width
31 AQCU155 spikelet number
32 AQCU187 days to heading
33 AQFE064 seed set percent
34 AQGM011 panicle length
35 CQAS69 panicle length
36 AQDK012 spikelet number
37 AQDK019 1000-seed weight
38 AQEF001 spikelet number
39 AQP008 primary branch
40 CQM1 embryosac abortion
41 CQAJ14 yield
42 AQHP082 drought tolerance
43 AQBA018 brown planthopper resistance
44 AQBA020 brown planthopper resistance
45 AQCJ006 rice yellow mottle virus resistance
46 AQW009 brown planthopper resistance
47 AQW010 brown planthopper resistance
48 AQW011 brown planthopper resistance
49 AQCK009 days to heading
50 CQE44 days to heading
51 CQE45 carbon content
52 AQA023 root number
53 CQJ8 panicle number
54 CQAS66 plant height
55 AQFB004 seed dormancy
56 AQDY079 panicle length
57 AQDY080 panicle length
58 AQDY081 panicle length
59 CQX26 internode length
60 CQX29 internode length
61 AQEI112 leaf senescence
62 AQEI139 leaf senescence
63 AQEI142 leaf senescence

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009005 root (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Funayama Kazuhiro; Kojima Soichi; Tabuchi-Kobayashi Mayumi; Sawa Yuki; Nakayama Yosuke; Hayakawa Toshihiko; Yamaya Tomoyuki; Cytosolic glutamine synthetase1;2 is responsible for the primary assimilation of ammonium in rice roots. Plant & cell physiology 2013:
PMID [23509111]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India