Rice gene details
Searching for LOC_Os06g16350 [peroxidase precursor, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os06g16350.1 335 49 299 PF00141.15 peroxidase
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -16
N22InfloresenceFC
  3
N22 Root FC
  -8
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  2
IR64 Root FC
  -5

Functional details
Molecular Function
Not found
1 GO:0005488 binding (RGAP)
2 GO:0003824 catalytic activity (RGAP)
Biological process
Not found
1 GO:0006950 response to stress (RGAP)
2 GO:0008152 metabolic process (RGAP)
Cellular component
Not found
1 GO:0005623 cell (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007024 aerobic environment (+)
2 MCE:1000195 hypoxic environment (+)
3 MCE:1000330 nitrogen flushing (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 PWY-4041 γ-glutamyl cycle

QTL details
S. No. QTL Id QTL Associated Trait
1 CQX3 days to heading
2 AQX010 secondary branch
3 AQBK042 seed number
4 AQBK045 seed set percent
5 AQDR007 1000-seed weight
6 AQEO002 spikelet number
7 AQAP029 brown planthopper resistance
8 AQCU019 plant height
9 AQDZ008 culm thickness
10 AQEB003 1000-seed weight
11 AQEB007 1000-seed weight
12 AQEB012 1000-seed weight
13 AQDZ014 lodging incidence
14 AQFP014 culm length
15 AQFU019 alkali digestion
16 AQFU027 seed length to width ratio
17 AQX011 secondary branch
18 CQAO23 spikelet density
19 CQAO24 spikelet number
20 CQAX29 plant height
21 AQCU085 panicle length
22 AQCU135 leaf length
23 AQCU143 leaf width
24 AQCU155 spikelet number
25 AQCU187 days to heading
26 AQFE064 seed set percent
27 AQGM011 panicle length
28 CQAS69 panicle length
29 CQAJ14 yield
30 AQHP082 drought tolerance
31 AQBA018 brown planthopper resistance
32 AQBA020 brown planthopper resistance
33 AQCJ006 rice yellow mottle virus resistance
34 AQW009 brown planthopper resistance
35 AQW010 brown planthopper resistance
36 AQW011 brown planthopper resistance
37 AQCK009 days to heading
38 CQE44 days to heading
39 CQE45 carbon content
40 AQA023 root number
41 CQJ8 panicle number
42 CQAS66 plant height
43 AQFB004 seed dormancy
44 CQX26 internode length
45 CQX29 internode length
46 AQEI112 leaf senescence
47 AQEI139 leaf senescence
48 AQEI142 leaf senescence
49 AQCO018 spikelet fertility
50 AQCP018 spikelet fertility
51 AQDD003 potassium content
52 AQCO003 pollen fertility
53 AQCO007 spikelet fertility
54 AQCO009 spikelet fertility
55 AQCO012 spikelet fertility
56 AQCO016 spikelet fertility
57 AQCO020 spikelet fertility
58 AQCP003 pollen fertility
59 AQCP007 spikelet fertility
60 AQCP009 spikelet fertility
61 AQCP012 spikelet fertility
62 AQCP016 spikelet fertility
63 AQCP020 spikelet fertility
64 CQB18 1000-grain weight
65 CQB39 1000-grain weight

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000559 long adventitious root (+)
2 MCP:1000560 short adventitious root (+)
3 PO:0005427 sclerenchyma (+)
4 PO:0005772 exodermis (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Shiono Katsuhiro; Yamauchi Takaki; Yamazaki So; Mohanty Bijayalaxmi; Malik Al Imran; Nagamura Yoshiaki; Nishizawa Naoko K; Tsutsumi Nobuhiro; Colmer Timothy D; Nakazono Mikio; Microarray analysis of laser-microdissected tissues indicates the biosynthesis of suberin in the outer part of roots during formation of a barrier to radial oxygen loss in rice (Oryza sativa). Journal of experimental botany 2014:65
PMID [24913626]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India