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Searching for LOC_Os06g16370
[CCT/B-box zinc finger protein, putative, expressed ] |
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Basic information [Pfam DB] |
Graphical representation of the protein domains |
S. No. |
Locus Id |
Protein Length |
Doman Start |
Domain End |
Pfam ID |
Domain Name |
1 |
LOC_Os06g16370.1 |
396 |
30 |
77 |
PF00643.16 |
zf-B_box |
2 |
LOC_Os06g16370.1 |
396 |
326 |
370 |
PF06203.6 |
CCT |
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The basic information is from RGAP and Pfam/InterPro databases |
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Gene model (download) 
IR64 N22
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Gene Expression
(RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC |
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N22InfloresenceFC |
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N22 Root FC |
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IR64 Flag-leaf FC |
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IR64InfloresenceFC |
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IR64 Root FC |
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Functional details
Molecular Function
S. No. |
GO Id |
GO Description |
1 |
GO:0005488 |
binding |
(RGAP) |
2 |
GO:0003700 |
sequence-specific DNA binding transcription factor activity |
(RGAP) |
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Biological process
S. No. |
GO Id |
GO Description |
1 |
GO:0009733 |
response to auxin stimulus |
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2 |
GO:0009058 |
biosynthetic process |
(RGAP) |
3 |
GO:0006139 |
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process |
(RGAP) |
4 |
GO:0009908 |
flower development |
(RGAP) |
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Cellular component
S. No. |
GO Id |
GO Description |
1 |
GO:0005622 |
intracellular |
(RGAP) |
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Environment details
S. No. |
EO Id |
EO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
EO:0007196 |
light regimen |
(+) |
2 |
EO:0007199 |
long day length regimen |
(+) |
3 |
EO:0007200 |
short day length regimen |
(+) |
4 |
MCE:1000203 |
dark regimen |
(+) |
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Metabolic Pathway details
QTL details
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Plant developmental stage / tissue details
Plant development stage
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
MCP:1000110 |
1 day pre-heading stage |
(+) |
2 |
MCP:1000136 |
5 days pre-heading stage |
(+) |
3 |
MCP:1000231 |
pollen mother cell formation stage |
(+) |
4 |
MCP:1000250 |
inflorescenece secondary branch primordium differentiation stage |
(+) |
5 |
MCP:1000251 |
pistil/stamen primordium differentiation stage |
(+) |
6 |
MCP:1000288 |
7 days post-anthesis stage |
(+) |
7 |
MCP:1000436 |
14 days post-anthesis stage |
(+) |
8 |
MCP:1000482 |
21 days post-anthesis stage |
(+) |
9 |
MCP:1000489 |
3 days post-anthesis stage |
(+) |
10 |
MCP:1000518 |
seedling development stage |
(+) |
11 |
PO:0001029 |
E tetrad stage |
(+) |
12 |
PO:0007022 |
imbibition |
(+) |
13 |
PO:0007041 |
inflorescence emergence from flag leaf sheath |
(+) |
14 |
PO:0007071 |
2.02 main shoot and axillary shoots visible at two nodes |
(+) |
15 |
PO:0007106 |
LP.03 three leaves visible |
(+) |
Plant tissue/organ
Others
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
Not found |
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Trait details
Physical interaction details
Interaction type: protein-protein
Interaction type: protein-DNA
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Related publications [Sorted by year] |
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1 |
Choi Sang Chul; Lee Shinyoung; Kim Sung-Ryul; Lee Yang-Seok; Liu Chunyan; Cao Xiaofeng; An Gynheung; Trithorax Group Protein Oryza sativa Trithorax1 Controls Flowering Time in Rice via Interaction with Early heading date3. Plant physiology 2014:164
PMID [24420930]
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2 |
Huang Jianyan; Zhao Xiaobo; Weng Xiaoyu; Wang Lei; Xie Weibo; The rice B-box zinc finger gene family: genomic identification, characterization, expression profiling and diurnal analysis. Plos One 2012:7
PMID [23118960]
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3 |
Zhao Xiao-Ling; Shi Zhen-Ying; Peng Ling-Tao; Shen Ge-Zhi; Zhang Jing-Liu; An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15. New Biotechnology 2011:28
PMID [21549224]
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4 |
Kim Soon-Kap; Yun Choong-Hyo; Lee Jeong Hwan; Jang Yun Hee; Park Hyo-Young; Kim Jeong-Kook; OsCO3, a CONSTANS-LIKE gene, controls flowering by negatively regulating the expression of FT-like genes under SD conditions in rice. Planta 2008:228
PMID [18449564]
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