Rice gene details
Searching for LOC_Os06g16370 [CCT/B-box zinc finger protein, putative, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os06g16370.1 396 30 77 PF00643.16 zf-B_box
2 LOC_Os06g16370.1 396 326 370 PF06203.6 CCT
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -5
N22InfloresenceFC
  2
N22 Root FC
  2
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  1
IR64 Root FC
  1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0005488 binding (RGAP)
2 GO:0003700 sequence-specific DNA binding transcription factor activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009733 response to auxin stimulus  
2 GO:0009058 biosynthetic process (RGAP)
3 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
4 GO:0009908 flower development (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005622 intracellular (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007196 light regimen (+)
2 EO:0007199 long day length regimen (+)
3 EO:0007200 short day length regimen (+)
4 MCE:1000203 dark regimen (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQX3 days to heading
2 AQX010 secondary branch
3 AQBK042 seed number
4 AQBK045 seed set percent
5 AQDR007 1000-seed weight
6 AQEO002 spikelet number
7 AQAP029 brown planthopper resistance
8 AQCU019 plant height
9 AQDZ008 culm thickness
10 AQEB003 1000-seed weight
11 AQEB007 1000-seed weight
12 AQEB012 1000-seed weight
13 AQDZ014 lodging incidence
14 AQFP014 culm length
15 AQFU019 alkali digestion
16 AQFU027 seed length to width ratio
17 AQX011 secondary branch
18 CQAO23 spikelet density
19 CQAO24 spikelet number
20 CQAX29 plant height
21 AQCU085 panicle length
22 AQCU135 leaf length
23 AQCU143 leaf width
24 AQCU155 spikelet number
25 AQCU187 days to heading
26 AQFE064 seed set percent
27 AQGM011 panicle length
28 CQAS69 panicle length
29 CQAJ14 yield
30 AQHP082 drought tolerance
31 AQBA018 brown planthopper resistance
32 AQBA020 brown planthopper resistance
33 AQCJ006 rice yellow mottle virus resistance
34 AQW009 brown planthopper resistance
35 AQW010 brown planthopper resistance
36 AQW011 brown planthopper resistance
37 AQCK009 days to heading
38 CQE44 days to heading
39 CQE45 carbon content
40 AQA023 root number
41 CQJ8 panicle number
42 CQAS66 plant height
43 AQFB004 seed dormancy
44 CQX26 internode length
45 CQX29 internode length
46 AQEI112 leaf senescence
47 AQEI139 leaf senescence
48 AQEI142 leaf senescence
49 AQCO018 spikelet fertility
50 AQCP018 spikelet fertility
51 AQDD003 potassium content
52 AQCO003 pollen fertility
53 AQCO007 spikelet fertility
54 AQCO009 spikelet fertility
55 AQCO012 spikelet fertility
56 AQCO016 spikelet fertility
57 AQCO020 spikelet fertility
58 AQCP003 pollen fertility
59 AQCP007 spikelet fertility
60 AQCP009 spikelet fertility
61 AQCP012 spikelet fertility
62 AQCP016 spikelet fertility
63 AQCP020 spikelet fertility
64 CQB18 1000-grain weight
65 CQB39 1000-grain weight

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000110 1 day pre-heading stage (+)
2 MCP:1000136 5 days pre-heading stage (+)
3 MCP:1000231 pollen mother cell formation stage (+)
4 MCP:1000250 inflorescenece secondary branch primordium differentiation stage (+)
5 MCP:1000251 pistil/stamen primordium differentiation stage (+)
6 MCP:1000288 7 days post-anthesis stage (+)
7 MCP:1000436 14 days post-anthesis stage (+)
8 MCP:1000482 21 days post-anthesis stage (+)
9 MCP:1000489 3 days post-anthesis stage (+)
10 MCP:1000518 seedling development stage (+)
11 PO:0001029 E tetrad stage (+)
12 PO:0007022 imbibition (+)
13 PO:0007041 inflorescence emergence from flag leaf sheath (+)
14 PO:0007071 2.02 main shoot and axillary shoots visible at two nodes (+)
15 PO:0007106 LP.03 three leaves visible (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0006000 Poaceae hull (+)
2 PO:0008037 seedling (+)
3 PO:0009005 root (+)
4 PO:0009006 shoot system (+)
5 PO:0009010 seed (+)
6 PO:0009029 stamen (+)
7 PO:0009047 stem (+)
8 PO:0009049 inflorescence (+)
9 PO:0009051 spikelet (+)
10 PO:0009089 endosperm (+)
11 PO:0020039 leaf lamina (+)
12 PO:0020103 flag leaf (+)
13 PO:0020104 leaf sheath (+)
14 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Choi Sang Chul; Lee Shinyoung; Kim Sung-Ryul; Lee Yang-Seok; Liu Chunyan; Cao Xiaofeng; An Gynheung; Trithorax Group Protein Oryza sativa Trithorax1 Controls Flowering Time in Rice via Interaction with Early heading date3. Plant physiology 2014:164
PMID [24420930]


2  Huang Jianyan; Zhao Xiaobo; Weng Xiaoyu; Wang Lei; Xie Weibo; The rice B-box zinc finger gene family: genomic identification, characterization, expression profiling and diurnal analysis. Plos One 2012:7
PMID [23118960]


3  Zhao Xiao-Ling; Shi Zhen-Ying; Peng Ling-Tao; Shen Ge-Zhi; Zhang Jing-Liu; An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15. New Biotechnology 2011:28
PMID [21549224]


4  Kim Soon-Kap; Yun Choong-Hyo; Lee Jeong Hwan; Jang Yun Hee; Park Hyo-Young; Kim Jeong-Kook; OsCO3, a CONSTANS-LIKE gene, controls flowering by negatively regulating the expression of FT-like genes under SD conditions in rice. Planta 2008:228
PMID [18449564]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India