Rice gene details
Searching for LOC_Os06g20340 [dual specificity protein phosphatase, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os06g20340.1 282 56 189 PF00782.12 DSPc
2 LOC_Os06g20340.2 203 36 110 PF00782.12 DSPc
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  1
N22 Root FC
  -1
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  1
IR64 Root FC
  1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0016787 hydrolase activity (RGAP)
2 GO:0005515 protein binding (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009737 response to abscisic acid stimulus  
2 GO:0009719 response to endogenous stimulus (RGAP)
3 GO:0007165 signal transduction (RGAP)
4 GO:0006464 protein modification process (RGAP)
5 GO:0008152 metabolic process (RGAP)
6 GO:0009987 cellular process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005634 nucleus  
2 GO:0005737 cytoplasm  
3 GO:0005634 nucleus (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007105 abscisic acid regimen (+)
2 EO:0007404 drought environment (+)
3 EO:0007415 hydrogen peroxide (+)
4 MCE:1000016 polyethylene glycol (PEG) treatment (+)
5 MCE:1000075 recovery treatment (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQX3 days to heading
2 AQX010 secondary branch
3 AQBK042 seed number
4 AQBK045 seed set percent
5 AQDR007 1000-seed weight
6 AQEO002 spikelet number
7 AQAP029 brown planthopper resistance
8 AQCU019 plant height
9 AQDZ008 culm thickness
10 AQEB003 1000-seed weight
11 AQEB007 1000-seed weight
12 AQEB012 1000-seed weight
13 AQDZ014 lodging incidence
14 AQFP014 culm length
15 AQFU019 alkali digestion
16 AQFU027 seed length to width ratio
17 AQX011 secondary branch
18 AQCU085 panicle length
19 AQCU135 leaf length
20 AQCU143 leaf width
21 AQCU155 spikelet number
22 AQCU187 days to heading
23 AQFE064 seed set percent
24 AQGM011 panicle length
25 CQAS69 panicle length
26 CQAJ14 yield
27 AQBA018 brown planthopper resistance
28 AQBA020 brown planthopper resistance
29 AQCJ006 rice yellow mottle virus resistance
30 AQW009 brown planthopper resistance
31 AQW010 brown planthopper resistance
32 AQW011 brown planthopper resistance
33 AQA023 root number
34 CQJ8 panicle number
35 CQAS66 plant height
36 AQFB004 seed dormancy
37 AQEI112 leaf senescence
38 AQEI139 leaf senescence
39 AQEI142 leaf senescence
40 AQCO003 pollen fertility
41 AQCO007 spikelet fertility
42 AQCO009 spikelet fertility
43 AQCO012 spikelet fertility
44 AQCO016 spikelet fertility
45 AQCO020 spikelet fertility
46 AQCP003 pollen fertility
47 AQCP007 spikelet fertility
48 AQCP009 spikelet fertility
49 AQCP012 spikelet fertility
50 AQCP016 spikelet fertility
51 AQCP020 spikelet fertility
52 CQB18 1000-grain weight
53 CQB39 1000-grain weight
54 CQAR19 spikelet density
55 CQAU4 panicle number
56 AQEN006 blast disease resistance
57 AQEN014 blast disease resistance
58 AQHQ005 days to flower
59 AQHQ025 photoperiod sensitivity
60 CQAR20 spikelet number
61 CQAR21 spikelet density
62 CQAW20 penetrated root number
63 CQAX6 plant height
64 AQDK005 ratooning ability
65 CQB19 grain number
66 AQBS004 days to heading
67 AQBS033 spikelet number
68 CQA11 vegetative growth time
69 CQA12 reproductive growth time
70 CQH25 root dry weight
71 CQE46 leaf height

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0001053 3 leaf fully expanded (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000363 fifth leaf from base (+)
2 PO:0000003 whole plant (+)
3 PO:0006019 leaf abaxial epidermis (+)
4 PO:0008037 seedling (+)
5 PO:0009005 root (+)
6 PO:0009006 shoot system (+)
7 PO:0020104 leaf sheath (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000012 survival rate (+)
2 MCT:1000058 wilting ratio (+)
3 MCT:1000111 stomatal aperture size (+)
4 MCT:1000112 oxidative damage (+)
5 TO:0000188 drought sensitivity (+)
6 TO:0000495 chlorophyll content (+)
7 TO:0000520 stomatal closure rate (+)
8 TO:0000522 stomatal conductance (+)
9 TO:0000571 shoot fresh weight (+)
10 TO:0000578 root fresh weight (+)
11 TO:0001018 transpiration rate (+)
12 TO:0002681 leaf curling (+)
13 TO:0020097 stomatal opening (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Li Yuge; Feng Dongru; Zhang Deli; Su Jianbin; Zhang Yang; Li Zhangqun; Mu Peiqiang; Liu Bing; Wang Hongbin; Wang Jinfa; Rice MAPK phosphatase IBR5 negatively regulates drought stress tolerance in transgenic Nicotiana tabacum. Plant science 2012: 188-189
PMID [22525239]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India