Rice gene details
Searching for LOC_Os06g22980 [CSLD5 - cellulose synthase-like family D, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os06g22980.1 1013 139 1013 PF03552.6 Cellulose_synt
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
 
N22InfloresenceFC
  -1
N22 Root FC
 
IR64 Flag-leaf FC
 
IR64InfloresenceFC
  -1
IR64 Root FC
 

Functional details
Molecular Function
Not found
1 GO:0016740 transferase activity (RGAP)
Biological process
Not found
1 GO:0009856 pollination (RGAP)
2 GO:0009058 biosynthetic process (RGAP)
3 GO:0005975 carbohydrate metabolic process (RGAP)
4 GO:0009987 cellular process (RGAP)
Cellular component
Not found

Environment details
Not found

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 PWY-1001 cellulose biosynthesis

QTL details
S. No. QTL Id QTL Associated Trait
1 CQX3 days to heading
2 AQX010 secondary branch
3 AQBK042 seed number
4 AQBK045 seed set percent
5 AQDR007 1000-seed weight
6 AQAP029 brown planthopper resistance
7 AQCU019 plant height
8 AQDZ008 culm thickness
9 AQEB003 1000-seed weight
10 AQEB007 1000-seed weight
11 AQEB012 1000-seed weight
12 AQDZ014 lodging incidence
13 AQFP014 culm length
14 AQFU019 alkali digestion
15 AQFU027 seed length to width ratio
16 AQX011 secondary branch
17 AQCU085 panicle length
18 AQCU135 leaf length
19 AQCU143 leaf width
20 AQCU155 spikelet number
21 AQCU187 days to heading
22 AQFE064 seed set percent
23 AQGM011 panicle length
24 CQAS69 panicle length
25 CQAJ14 yield
26 AQBA018 brown planthopper resistance
27 AQBA020 brown planthopper resistance
28 AQCJ006 rice yellow mottle virus resistance
29 AQW009 brown planthopper resistance
30 AQW010 brown planthopper resistance
31 AQW011 brown planthopper resistance
32 AQA023 root number
33 CQJ8 panicle number
34 CQAS66 plant height
35 AQEI112 leaf senescence
36 AQEI139 leaf senescence
37 AQEI142 leaf senescence
38 CQB18 1000-grain weight
39 CQB39 1000-grain weight
40 CQAR19 spikelet density
41 CQAU4 panicle number
42 AQEN006 blast disease resistance
43 AQEN014 blast disease resistance
44 AQHQ005 days to flower
45 AQHQ025 photoperiod sensitivity
46 CQAR20 spikelet number
47 CQAR21 spikelet density
48 CQAW20 penetrated root number
49 CQAX6 plant height
50 AQDK005 ratooning ability
51 CQB19 grain number
52 AQBS004 days to heading
53 AQBS033 spikelet number
54 CQH25 root dry weight
55 CQE46 leaf height

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000520 young inflorescence stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0005004 shoot node (+)
2 PO:0009005 root (+)
3 PO:0009047 stem (+)
4 PO:0009049 inflorescence (+)
5 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Ding Zhengquan; Lin Zefeng; Li Qin; Wu Hao; Xiang Chunyan; Wang Jianfei; DNL1, encodes cellulose synthase-like D4, is a major QTL for plant height and leaf width in rice (Oryza sativa L.). Biochemical and biophysical research communications 2015:457
PMID [25522878]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India