Rice gene details
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Searching for
LOC_Os06g24730
[hydrolase, alpha/beta fold family domain containing protein, expressed
]
Basic information [Pfam DB]
Graphical representation of the protein domains
S. No.
Locus Id
Protein Length
Doman Start
Domain End
Pfam ID
Domain Name
1
LOC_Os06g24730.1
487
153
275
PF00561.12
Abhydrolase_1
2
LOC_Os06g24730.2
464
153
275
PF00561.12
Abhydrolase_1
3
LOC_Os06g24730.3
427
153
275
PF00561.12
Abhydrolase_1
The basic information is from RGAP and Pfam/InterPro databases
Gene model (download)
IR64
N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
-1
N22InfloresenceFC
3
N22 Root FC
1
IR64 Flag-leaf FC
2
IR64InfloresenceFC
1
IR64 Root FC
-2
Functional details
Molecular Function
Not found
1
GO:0016787
hydrolase activity
(RGAP)
Biological process
Not found
1
GO:0008152
metabolic process
(RGAP)
2
GO:0009987
cellular process
(RGAP)
3
GO:0009056
catabolic process
(RGAP)
Cellular component
Not found
1
GO:0009536
plastid
(RGAP)
Environment details
S. No.
EO Id
EO Description
Presence(+) or absence(-) of gene expression /activity
1
EO:0007187
salicylic acid regimen
(
+
)
2
EO:0007270
continuous dark (no light) regimen
(
+
)
3
EO:0007407
methyl jasmonate
(
+
)
4
MCE:1000203
dark regimen
(
+
)
Metabolic Pathway details
Not found
QTL details
S. No.
QTL Id
QTL Associated Trait
1
CQX3
days to heading
2
AQX010
secondary branch
3
AQBK042
seed number
4
AQBK045
seed set percent
5
AQDR007
1000-seed weight
6
AQAP029
brown planthopper resistance
7
AQCU019
plant height
8
AQDZ008
culm thickness
9
AQEB003
1000-seed weight
10
AQEB007
1000-seed weight
11
AQEB012
1000-seed weight
12
AQDZ014
lodging incidence
13
AQFP014
culm length
14
AQFU019
alkali digestion
15
AQFU027
seed length to width ratio
16
AQX011
secondary branch
17
AQCU085
panicle length
18
AQCU135
leaf length
19
AQCU143
leaf width
20
AQCU155
spikelet number
21
AQCU187
days to heading
22
AQFE064
seed set percent
23
AQGM011
panicle length
24
CQAJ14
yield
25
AQBA018
brown planthopper resistance
26
AQBA020
brown planthopper resistance
27
AQCJ006
rice yellow mottle virus resistance
28
AQW009
brown planthopper resistance
29
AQW010
brown planthopper resistance
30
AQW011
brown planthopper resistance
31
AQA023
root number
32
CQJ8
panicle number
33
CQAS66
plant height
34
AQEI112
leaf senescence
35
AQEI139
leaf senescence
36
AQEI142
leaf senescence
37
CQB18
1000-grain weight
38
CQB39
1000-grain weight
39
CQAR19
spikelet density
40
CQAU4
panicle number
41
AQEN006
blast disease resistance
42
AQEN014
blast disease resistance
43
AQHQ005
days to flower
44
AQHQ025
photoperiod sensitivity
45
CQAR20
spikelet number
46
CQAR21
spikelet density
47
CQAW20
penetrated root number
48
CQAX6
plant height
49
AQDK005
ratooning ability
50
CQB19
grain number
51
AQBS004
days to heading
52
AQBS033
spikelet number
53
CQH25
root dry weight
54
CQE46
leaf height
55
AQBG001
white-backed planthopper resistance
56
AQBG002
white-backed planthopper resistance
57
AQBG009
white-backed planthopper resistance
58
AQBG011
white-backed planthopper resistance
59
AQBG014
white-backed planthopper resistance
60
AQBG017
white-backed planthopper resistance
61
AQFZ002
ferulic acid content
62
AQGB034
grain width
63
CQAS72
spikelet density
64
CQAS76
spikelet number
65
CQAS77
seed number
66
CQF8
soluble protein content
Plant developmental stage / tissue details
Plant development stage
S. No.
PO Id
PO Description
Presence(+) or absence(-) of gene expression /activity
Not found
Plant tissue/organ
S. No.
PO Id
PO Description
Presence(+) or absence(-) of gene expression /activity
1
PO:0009025
vascular leaf
(
+
)
2
PO:0025034
leaf
(
+
)
Others
S. No.
PO Id
PO Description
Presence(+) or absence(-) of gene expression /activity
Not found
Trait details
Not found
Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
S. No.
Primary rice gene loci
Interacting rice gene loci
Experiment type
Id
Domain name/N or C term
Amino acid involved in interaction
Id
Domain name/N or C term
Bases
involved in interaction
Reference point
cis-elements [PLACE Id]
1
LOC_Os03g21060
-
---
LOC_Os06g24730
-
- -
-
Protein-DNA interaction analysis : Chromatin Immunoprecipitation (ChIP)
2
LOC_Os03g21060
-
---
LOC_Os06g24730
-
- -
-
Protein-DNA interaction analysis : Yeast one-hybrid analysis
TSS - Transcriptional start site
TrSS - Translational start site
TSS-Pu - Putative TSS by cDNA alignment
TSS-P - Predicted TSS
Related publications [Sorted by year]
1
Yamatani Hiroshi; Sato Yutaka; Masuda Yu; Kato Yusuke; Morita Ryouhei; Fukunaga Kenji; Nagamura Yoshiaki; Nishimura Minoru; Sakamoto Wataru; Tanaka Ayumi; Kusaba Makoto; NYC4, the rice ortholog of Arabidopsis THF1, is involved in the degradation of chlorophyll-protein complexes during leaf senescence. The Plant journal 2013:
PMID [
23432654
]
2
Fukao Takeshi; Yeung Elaine; Bailey-Serres Julia; The submergence tolerance gene, SUB1A, delays leaf senescence under prolonged darkness through hormonal regulation in rice. Plant Physiology 2012:
PMID [
23073696
]
Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India