Rice gene details
Searching for LOC_Os06g24730 [hydrolase, alpha/beta fold family domain containing protein, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os06g24730.1 487 153 275 PF00561.12 Abhydrolase_1
2 LOC_Os06g24730.2 464 153 275 PF00561.12 Abhydrolase_1
3 LOC_Os06g24730.3 427 153 275 PF00561.12 Abhydrolase_1
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -1
N22InfloresenceFC
  3
N22 Root FC
  1
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  1
IR64 Root FC
  -2

Functional details
Molecular Function
Not found
1 GO:0016787 hydrolase activity (RGAP)
Biological process
Not found
1 GO:0008152 metabolic process (RGAP)
2 GO:0009987 cellular process (RGAP)
3 GO:0009056 catabolic process (RGAP)
Cellular component
Not found
1 GO:0009536 plastid (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007187 salicylic acid regimen (+)
2 EO:0007270 continuous dark (no light) regimen (+)
3 EO:0007407 methyl jasmonate (+)
4 MCE:1000203 dark regimen (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQX3 days to heading
2 AQX010 secondary branch
3 AQBK042 seed number
4 AQBK045 seed set percent
5 AQDR007 1000-seed weight
6 AQAP029 brown planthopper resistance
7 AQCU019 plant height
8 AQDZ008 culm thickness
9 AQEB003 1000-seed weight
10 AQEB007 1000-seed weight
11 AQEB012 1000-seed weight
12 AQDZ014 lodging incidence
13 AQFP014 culm length
14 AQFU019 alkali digestion
15 AQFU027 seed length to width ratio
16 AQX011 secondary branch
17 AQCU085 panicle length
18 AQCU135 leaf length
19 AQCU143 leaf width
20 AQCU155 spikelet number
21 AQCU187 days to heading
22 AQFE064 seed set percent
23 AQGM011 panicle length
24 CQAJ14 yield
25 AQBA018 brown planthopper resistance
26 AQBA020 brown planthopper resistance
27 AQCJ006 rice yellow mottle virus resistance
28 AQW009 brown planthopper resistance
29 AQW010 brown planthopper resistance
30 AQW011 brown planthopper resistance
31 AQA023 root number
32 CQJ8 panicle number
33 CQAS66 plant height
34 AQEI112 leaf senescence
35 AQEI139 leaf senescence
36 AQEI142 leaf senescence
37 CQB18 1000-grain weight
38 CQB39 1000-grain weight
39 CQAR19 spikelet density
40 CQAU4 panicle number
41 AQEN006 blast disease resistance
42 AQEN014 blast disease resistance
43 AQHQ005 days to flower
44 AQHQ025 photoperiod sensitivity
45 CQAR20 spikelet number
46 CQAR21 spikelet density
47 CQAW20 penetrated root number
48 CQAX6 plant height
49 AQDK005 ratooning ability
50 CQB19 grain number
51 AQBS004 days to heading
52 AQBS033 spikelet number
53 CQH25 root dry weight
54 CQE46 leaf height
55 AQBG001 white-backed planthopper resistance
56 AQBG002 white-backed planthopper resistance
57 AQBG009 white-backed planthopper resistance
58 AQBG011 white-backed planthopper resistance
59 AQBG014 white-backed planthopper resistance
60 AQBG017 white-backed planthopper resistance
61 AQFZ002 ferulic acid content
62 AQGB034 grain width
63 CQAS72 spikelet density
64 CQAS76 spikelet number
65 CQAS77 seed number
66 CQF8 soluble protein content

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009025 vascular leaf (+)
2 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
S. No. Primary rice gene loci

Interacting rice gene loci

Experiment type

Id

Domain name/N or C term

 Amino acid involved in interaction

Id

Domain name/N or C term

 Bases
involved in interaction		 Reference point cis-elements [PLACE Id]
1 LOC_Os03g21060 - --- LOC_Os06g24730 - - - - Protein-DNA interaction analysis : Chromatin Immunoprecipitation (ChIP)
2 LOC_Os03g21060 - --- LOC_Os06g24730 - - - - Protein-DNA interaction analysis : Yeast one-hybrid analysis
      TSS - Transcriptional start site
TrSS - Translational start site		 TSS-Pu - Putative TSS by cDNA alignment
TSS-P - Predicted TSS
Related publications [Sorted by year]

1  Yamatani Hiroshi; Sato Yutaka; Masuda Yu; Kato Yusuke; Morita Ryouhei; Fukunaga Kenji; Nagamura Yoshiaki; Nishimura Minoru; Sakamoto Wataru; Tanaka Ayumi; Kusaba Makoto; NYC4, the rice ortholog of Arabidopsis THF1, is involved in the degradation of chlorophyll-protein complexes during leaf senescence. The Plant journal 2013:
PMID [23432654]


2  Fukao Takeshi; Yeung Elaine; Bailey-Serres Julia; The submergence tolerance gene, SUB1A, delays leaf senescence under prolonged darkness through hormonal regulation in rice. Plant Physiology 2012:
PMID [23073696]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India