Rice gene details
Searching for LOC_Os06g30730 [ABC-2 type transporter domain containing protein, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os06g30730.1 625 89 272 PF00005.19 ABC_tran
2 LOC_Os06g30730.1 625 347 557 PF01061.16 ABC2_membrane
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  -1
N22 Root FC
  -19
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
  1
IR64 Root FC
  -9

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0016787 hydrolase activity (RGAP)
2 GO:0005215 transporter activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009408 response to heat  
2 GO:0009409 response to cold  
3 GO:0009651 response to salt stress  
4 GO:0009735 response to cytokinin stimulus  
5 GO:0009737 response to abscisic acid stimulus  
6 GO:0009739 response to gibberellin stimulus  
7 GO:0009741 response to brassinosteroid stimulus  
8 GO:0009753 response to jasmonic acid stimulus  
9 GO:0009961 response to 1-aminocyclopropane-1-carboxylic acid  
10 GO:0010555 response to mannitol stimulus  
11 GO:0006810 transport (RGAP)
12 GO:0009987 cellular process (RGAP)
13 GO:0009056 catabolic process (RGAP)
14 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0016020 membrane (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007069 gibberellic acid regimen (+)
3 EO:0007070 indole acetic acid regimen (+)
4 EO:0007080 jasmonic acid regimen (+)
5 EO:0007105 abscisic acid regimen (+)
6 EO:0007173 warm/hot temperature regimen (+)
7 EO:0007187 salicylic acid regimen (+)
8 EO:0007290 kinetin regimen (+)
9 EO:0007332 cold air temperature regimen (+)
10 MCE:1000023 benzyl aminopurine (BPA) (+)
11 MCE:1000044 mannitol (+)
12 MCE:1000056 1-aminocyclopropane-1-carboxylic acid (+)
13 MCE:1000063 epibrassinolide (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQX3 days to heading
2 AQX010 secondary branch
3 AQBK042 seed number
4 AQBK045 seed set percent
5 AQDR007 1000-seed weight
6 AQAP029 brown planthopper resistance
7 AQCU019 plant height
8 AQDZ008 culm thickness
9 AQEB003 1000-seed weight
10 AQEB007 1000-seed weight
11 AQEB012 1000-seed weight
12 AQDZ014 lodging incidence
13 AQFP014 culm length
14 AQFU019 alkali digestion
15 AQFU027 seed length to width ratio
16 AQX011 secondary branch
17 AQCU085 panicle length
18 AQCU135 leaf length
19 AQCU143 leaf width
20 AQCU155 spikelet number
21 AQCU187 days to heading
22 AQFE064 seed set percent
23 AQGM011 panicle length
24 CQAJ14 yield
25 AQBA018 brown planthopper resistance
26 AQBA020 brown planthopper resistance
27 AQCJ006 rice yellow mottle virus resistance
28 AQW009 brown planthopper resistance
29 AQW010 brown planthopper resistance
30 AQW011 brown planthopper resistance
31 AQA023 root number
32 CQJ8 panicle number
33 CQAS66 plant height
34 AQEI112 leaf senescence
35 AQEI139 leaf senescence
36 AQEI142 leaf senescence
37 CQAR19 spikelet density
38 CQAU4 panicle number
39 AQEN006 blast disease resistance
40 AQEN014 blast disease resistance
41 AQHQ005 days to flower
42 AQHQ025 photoperiod sensitivity
43 CQAR20 spikelet number
44 CQAR21 spikelet density
45 CQAW20 penetrated root number
46 CQAX6 plant height
47 AQDK005 ratooning ability
48 CQB19 grain number
49 AQBS004 days to heading
50 AQBS033 spikelet number
51 CQH25 root dry weight
52 CQE46 leaf height
53 AQBG001 white-backed planthopper resistance
54 AQBG002 white-backed planthopper resistance
55 AQBG009 white-backed planthopper resistance
56 AQBG011 white-backed planthopper resistance
57 AQBG014 white-backed planthopper resistance
58 AQBG017 white-backed planthopper resistance
59 AQFZ002 ferulic acid content
60 AQGB034 grain width
61 CQAS72 spikelet density
62 CQAS76 spikelet number
63 CQAS77 seed number
64 CQF8 soluble protein content
65 AQAW028 spikelet number
66 AQFT027 root dry weight
67 AQBK006 spikelet number
68 CQC5 spikelet number

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 PO:0007106 LP.03 three leaves visible (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009005 root (+)
2 PO:0009006 shoot system (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Matsuda Shuichi; Funabiki Atsushi; Furukawa Kaoru; Komori Nozomi; Koike Masanori; Tokuji Yoshihiko; Takamure Itsuro; Kato Kiyoaki; Genome-wide analysis and expression profiling of half-size ABC protein subgroup G in rice in response to abiotic stress and phytohormone treatments. Molecular genetics and genomics 2012:287
PMID [22996334]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India