Rice gene details
Searching for LOC_Os06g33610 [cyclic nucleotide-gated ion channel 1, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os06g33610.1 218 88 188 PF00027.21 cNMP_binding
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -2
N22InfloresenceFC
  2
N22 Root FC
  2
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  2
IR64 Root FC
  -2

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0000166 nucleotide binding (RGAP)
2 GO:0005215 transporter activity (RGAP)
3 GO:0005515 protein binding (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009409 response to cold  
2 GO:0009617 response to bacterium  
3 GO:0009723 response to ethylene stimulus  
4 GO:0009733 response to auxin stimulus  
5 GO:0009735 response to cytokinin stimulus  
6 GO:0009737 response to abscisic acid stimulus  
7 GO:0006810 transport (RGAP)
8 GO:0009987 cellular process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005886 plasma membrane (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007068 ethylene regimen (+)
2 EO:0007070 indole acetic acid regimen (+)
3 EO:0007105 abscisic acid regimen (+)
4 EO:0007198 water environment (+)
5 EO:0007234 Pseudomonas fuscovaginae (+)
6 EO:0007257 Xanthomonas oryzae pv. oryzae (+)
7 EO:0007290 kinetin regimen (+)
8 EO:0007332 cold air temperature regimen (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQX3 days to heading
2 AQX010 secondary branch
3 AQBK042 seed number
4 AQBK045 seed set percent
5 AQDR007 1000-seed weight
6 AQAP029 brown planthopper resistance
7 AQCU019 plant height
8 AQDZ008 culm thickness
9 AQEB003 1000-seed weight
10 AQEB007 1000-seed weight
11 AQEB012 1000-seed weight
12 AQDZ014 lodging incidence
13 AQFP014 culm length
14 AQFU019 alkali digestion
15 AQFU027 seed length to width ratio
16 AQX011 secondary branch
17 AQCU085 panicle length
18 AQCU135 leaf length
19 AQCU143 leaf width
20 AQCU155 spikelet number
21 AQCU187 days to heading
22 AQFE064 seed set percent
23 AQGM011 panicle length
24 CQAJ14 yield
25 CQAS66 plant height
26 AQEI112 leaf senescence
27 AQEI139 leaf senescence
28 AQEI142 leaf senescence
29 CQAR19 spikelet density
30 CQAU4 panicle number
31 AQEN006 blast disease resistance
32 AQEN014 blast disease resistance
33 AQHQ005 days to flower
34 AQHQ025 photoperiod sensitivity
35 CQAR20 spikelet number
36 CQAR21 spikelet density
37 CQAW20 penetrated root number
38 CQAX6 plant height
39 AQDK005 ratooning ability
40 CQB19 grain number
41 AQBS004 days to heading
42 AQBS033 spikelet number
43 CQH25 root dry weight
44 CQE46 leaf height
45 AQGB034 grain width
46 CQAS72 spikelet density
47 CQAS76 spikelet number
48 CQAS77 seed number
49 CQF8 soluble protein content
50 AQAW028 spikelet number
51 AQFT027 root dry weight
52 AQBK006 spikelet number
53 CQC5 spikelet number
54 AQEA385 plant height
55 AQEA387 plant height
56 AQEA389 plant height
57 AQEA391 plant height
58 AQEA393 plant height
59 AQEA395 plant height
60 AQEA397 plant height
61 AQEL023 root number
62 AQDU002 cold tolerance
63 AQEE041 head rice
64 AQEE043 cracked grain percentage
65 AQEI066 leaf senescence
66 AQEI113 leaf senescence
67 AQFJ072 grain yield per plant
68 AQGP039 days to heading
69 AQGP083 grain yield
70 CQAA2 leaf rolloing tolerance
71 CQAE11 panicle number
72 CQAF10 gelatinization temperature

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0007106 LP.03 three leaves visible (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Nawaz Zarqa; Kakar Kaleem Ullah; Saand Mumtaz A; Shu Qing-Yao; Cyclic nucleotide-gated ion channel gene family in rice, identification, characterization and experimental analysis of expression response to plant hormones, biotic and abiotic stresses. BMC genomics 2014:15
PMID [25280591]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India