Rice gene details
Searching for LOC_Os06g37180 [ATP synthase, putative, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os06g37180.1 489 25 91 PF02874.15 ATP-synt_ab_N
2 LOC_Os06g37180.1 489 147 377 PF00006.17 ATP-synt_ab
3 LOC_Os06g37180.1 489 394 486 PF00306.19 ATP-synt_ab_C
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  2
N22InfloresenceFC
  1
N22 Root FC
  3
IR64 Flag-leaf FC
  3
IR64InfloresenceFC
  -1
IR64 Root FC
  2

Functional details
Molecular Function
Not found
1 GO:0000166 nucleotide binding (RGAP)
2 GO:0016787 hydrolase activity (RGAP)
3 GO:0005215 transporter activity (RGAP)
Biological process
Not found
1 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
2 GO:0006810 transport (RGAP)
3 GO:0009987 cellular process (RGAP)
4 GO:0009058 biosynthetic process (RGAP)
5 GO:0009056 catabolic process (RGAP)
Cellular component
Not found
1 GO:0016020 membrane (RGAP)
2 GO:0005773 vacuole (RGAP)
3 GO:0009536 plastid (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQX3 days to heading
2 AQX010 secondary branch
3 AQBK042 seed number
4 AQBK045 seed set percent
5 AQDR007 1000-seed weight
6 AQAP029 brown planthopper resistance
7 AQCU019 plant height
8 AQDZ008 culm thickness
9 AQEB003 1000-seed weight
10 AQEB007 1000-seed weight
11 AQEB012 1000-seed weight
12 AQDZ014 lodging incidence
13 AQFP014 culm length
14 AQFU019 alkali digestion
15 AQFU027 seed length to width ratio
16 AQCU085 panicle length
17 AQCU135 leaf length
18 AQCU143 leaf width
19 AQCU155 spikelet number
20 AQCU187 days to heading
21 AQFE064 seed set percent
22 AQGM011 panicle length
23 CQAJ14 yield
24 CQAS66 plant height
25 AQEI112 leaf senescence
26 AQEI139 leaf senescence
27 AQEI142 leaf senescence
28 CQAR19 spikelet density
29 CQAU4 panicle number
30 AQEN006 blast disease resistance
31 AQEN014 blast disease resistance
32 AQHQ005 days to flower
33 AQHQ025 photoperiod sensitivity
34 CQAR20 spikelet number
35 CQAR21 spikelet density
36 CQAW20 penetrated root number
37 CQAX6 plant height
38 AQDK005 ratooning ability
39 CQB19 grain number
40 AQBS004 days to heading
41 AQBS033 spikelet number
42 CQH25 root dry weight
43 CQE46 leaf height
44 AQGB034 grain width
45 CQAS72 spikelet density
46 CQAS76 spikelet number
47 CQAS77 seed number
48 CQF8 soluble protein content
49 AQAW028 spikelet number
50 AQFT027 root dry weight
51 AQBK006 spikelet number
52 CQC5 spikelet number
53 AQEA385 plant height
54 AQEA387 plant height
55 AQEA389 plant height
56 AQEA391 plant height
57 AQEA393 plant height
58 AQEA395 plant height
59 AQEA397 plant height
60 AQEL023 root number
61 AQDU002 cold tolerance
62 AQEE041 head rice
63 AQEE043 cracked grain percentage
64 AQEI066 leaf senescence
65 AQEI113 leaf senescence
66 AQFJ072 grain yield per plant
67 AQGP039 days to heading
68 AQGP083 grain yield
69 CQAA2 leaf rolloing tolerance
70 CQAE11 panicle number
71 CQAF10 gelatinization temperature
72 AQEM002 salt sensitivity
73 CQX19 internode length
74 AQDY085 culm length
75 AQDY102 panicle number

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000003 whole plant (+)
2 PO:0009025 vascular leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Liu Citao; Mao Bigang; Ou Shujun; Wang Wei; Liu Linchuan; Wu Yanbin; Chu Chengcai; Wang Xiping; OsbZIP71, a bZIP transcription factor, confers salinity and drought tolerance in rice. Plant molecular biology 2014:84
PMID [23918260]


2  Diédhiou Calliste J; Popova Olga V; Dietz Karl-Josef; Golldack Dortje; The SNF1-type serine-threonine protein kinase SAPK4 regulates stress-responsive gene expression in rice. BMC Plant Biology 2008:8
PMID [18442365]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India