Rice gene details
Searching for LOC_Os06g38120 [low-affinity cation transporter, putative, expressed ]

Basic information [Interpro DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Interpro ID Domain Name
1 LOC_Os06g38120.1 512 3 24 seg
2 LOC_Os06g38120.1 512 27 42 seg
3 LOC_Os06g38120.1 512 46 66 seg
4 LOC_Os06g38120.1 512 71 80 seg
5 LOC_Os06g38120.1 512 177 192 seg
6 LOC_Os06g38120.1 512 201 215 seg
7 LOC_Os06g38120.1 512 290 304 seg
8 LOC_Os06g38120.1 512 316 325 seg
9 LOC_Os06g38120.1 512 349 364 seg
10 LOC_Os06g38120.1 512 374 389 seg
11 LOC_Os06g38120.1 512 488 502 seg
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
 
N22InfloresenceFC
  1
N22 Root FC
 
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
  1
IR64 Root FC
  1

Functional details
Molecular Function
S. No. GO Id GO Description
Biological process
S. No. GO Id GO Description
1 GO:0010233 phloem transport  
2 GO:0015691 cadmium ion transport  
Cellular component
S. No. GO Id GO Description
1 GO:0005886 plasma membrane  

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007223 cadmium chloride (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQX3 days to heading
2 AQX010 secondary branch
3 AQBK042 seed number
4 AQBK045 seed set percent
5 AQDR007 1000-seed weight
6 AQAP029 brown planthopper resistance
7 AQCU019 plant height
8 AQDZ008 culm thickness
9 AQEB003 1000-seed weight
10 AQEB007 1000-seed weight
11 AQEB012 1000-seed weight
12 AQDZ014 lodging incidence
13 AQFP014 culm length
14 AQFU019 alkali digestion
15 AQFU027 seed length to width ratio
16 AQCU085 panicle length
17 AQCU135 leaf length
18 AQCU143 leaf width
19 AQCU155 spikelet number
20 AQCU187 days to heading
21 AQFE064 seed set percent
22 AQGM011 panicle length
23 CQAJ14 yield
24 CQAS66 plant height
25 AQEI112 leaf senescence
26 AQEI139 leaf senescence
27 AQEI142 leaf senescence
28 CQAR19 spikelet density
29 CQAU4 panicle number
30 AQEN006 blast disease resistance
31 AQEN014 blast disease resistance
32 AQHQ005 days to flower
33 AQHQ025 photoperiod sensitivity
34 CQAR20 spikelet number
35 CQAR21 spikelet density
36 CQAW20 penetrated root number
37 CQAX6 plant height
38 AQBS004 days to heading
39 AQBS033 spikelet number
40 CQH25 root dry weight
41 CQE46 leaf height
42 AQGB034 grain width
43 CQAS72 spikelet density
44 CQAS76 spikelet number
45 CQAS77 seed number
46 CQF8 soluble protein content
47 AQAW028 spikelet number
48 AQFT027 root dry weight
49 AQBK006 spikelet number
50 CQC5 spikelet number
51 AQEA385 plant height
52 AQEA387 plant height
53 AQEA389 plant height
54 AQEA391 plant height
55 AQEA393 plant height
56 AQEA395 plant height
57 AQEA397 plant height
58 AQEL023 root number
59 AQDU002 cold tolerance
60 AQEE041 head rice
61 AQEE043 cracked grain percentage
62 AQEI066 leaf senescence
63 AQEI113 leaf senescence
64 AQFJ072 grain yield per plant
65 AQGP039 days to heading
66 AQGP083 grain yield
67 CQAA2 leaf rolloing tolerance
68 CQAE11 panicle number
69 CQAF10 gelatinization temperature
70 AQEM002 salt sensitivity
71 CQX19 internode length
72 AQDY085 culm length
73 AQDY102 panicle number

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0007010 6 ripening (+)
2 PO:0007016 4 flowering (+)
3 PO:0007041 inflorescence emergence from flag leaf sheath (+)
4 PO:0007134 A vegetative growth (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000237 second shoot internode (-)
2 MCP:1000257 xylem sap (+)
3 MCP:1000399 seventh leaf from base (+)
4 MCP:1000402 leaf region 1 cm from shoot base (+)
5 MCP:1000404 leaf region 2-3 cm above shoot base (+)
6 MCP:1000440 first shoot node (+)
7 MCP:1000443 eighth leaf from base (+)
8 MCP:1000475 border region of node I and internode II (+)
9 MCP:1000476 nodal septum (+)
10 PO:0005004 shoot node (+)
11 PO:0005020 vascular bundle (+)
12 PO:0005417 phloem (+)
13 PO:0005421 parenchyma (+)
14 PO:0009001 fruit (+)
15 PO:0009005 root (+)
16 PO:0009006 shoot system (+)
17 PO:0009037 lemma (+)
18 PO:0009038 palea (+)
19 PO:0009049 inflorescence (+)
20 PO:0009062 gynoecium (+)
21 PO:0009066 anther (+)
22 PO:0020039 leaf lamina (+)
23 PO:0020103 flag leaf (+)
24 PO:0020104 leaf sheath (+)
25 PO:0020141 stem node (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000410 straw weight (+)
2 TO:0000077 shoot anatomy and morphology trait (+)
3 TO:0000373 inflorescence anatomy and morphology trait (+)
4 TO:0000396 grain yield (+)
5 TO:0000609 potassium content (+)
6 TO:0006059 cadmium concentration (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Uraguchi Shimpei; Kamiya Takehiro; Clemens Stephan; Fujiwara Toru; Characterization of OsLCT1, a cadmium transporter from indica rice (Oryza sativa). Physiologia plantarum 2014:
PMID [24627964]


Uraguchi Shimpei; Kamiya Takehiro; Sakamoto Takuya; Kasai Koji; Sato Yutaka; Nagamura Yoshiaki; Yoshida Akiko; Kyozuka Junko; Ishikawa Satoru; Fujiwara Toru; Low-affinity cation transporter (OsLCT1) regulates cadmium transport into rice grains. Proceedings of The National Academy of Sciences of The United States of America 2011:108
PMID [22160725]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India