Rice gene details
Searching for LOC_Os06g40080 [heme oxygenase 1, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os06g40080.1 290 88 286 PF01126.12 Heme_oxygenase
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  1
N22 Root FC
  2
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
  1
IR64 Root FC
  -1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0004392 heme oxygenase (decyclizing) activity  
2 GO:0005488 binding (RGAP)
3 GO:0003824 catalytic activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0006979 response to oxidative stress  
2 GO:0009628 response to abiotic stimulus  
3 GO:0009058 biosynthetic process (RGAP)
4 GO:0009987 cellular process (RGAP)
5 GO:0008152 metabolic process (RGAP)
6 GO:0007275 multicellular organismal development (RGAP)
7 GO:0040007 growth (RGAP)
8 GO:0009605 response to external stimulus (RGAP)
9 GO:0007165 signal transduction (RGAP)
10 GO:0009628 response to abiotic stimulus (RGAP)
11 GO:0009056 catabolic process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0009507 chloroplast  
2 GO:0009536 plastid (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007171 pH regimen (+)
2 EO:0007173 warm/hot temperature regimen (+)
3 EO:0007175 temperature environment (+)
4 EO:0007199 long day length regimen (+)
5 EO:0007332 cold air temperature regimen (+)
6 EO:0007415 hydrogen peroxide (+)
7 MCE:1000091 methyl viologen/paraquat (+)
8 MCE:1000226 panhematin (hemin) (+)
9 MCE:1000227 carbon monoxide regimen (+)
10 MCE:1000228 zinc protoporphyrin IX( ZnPP) (+)
11 MCE:1000351 5-aminolevulinic acid (+)
12 MCE:1000352 oxyfluorfen (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQX3 days to heading
2 AQX010 secondary branch
3 AQBK042 seed number
4 AQBK045 seed set percent
5 AQAP029 brown planthopper resistance
6 AQCU019 plant height
7 AQDZ008 culm thickness
8 AQEB003 1000-seed weight
9 AQEB007 1000-seed weight
10 AQEB012 1000-seed weight
11 AQDZ014 lodging incidence
12 AQFP014 culm length
13 AQFU019 alkali digestion
14 AQFU027 seed length to width ratio
15 AQCU085 panicle length
16 AQCU135 leaf length
17 AQCU143 leaf width
18 AQCU155 spikelet number
19 AQCU187 days to heading
20 AQFE064 seed set percent
21 AQGM011 panicle length
22 CQAJ14 yield
23 CQAS66 plant height
24 AQEI112 leaf senescence
25 AQEI139 leaf senescence
26 AQEI142 leaf senescence
27 AQEN006 blast disease resistance
28 AQEN014 blast disease resistance
29 AQHQ005 days to flower
30 AQHQ025 photoperiod sensitivity
31 CQAR20 spikelet number
32 CQAR21 spikelet density
33 CQAW20 penetrated root number
34 CQAX6 plant height
35 AQBS004 days to heading
36 AQBS033 spikelet number
37 CQE46 leaf height
38 AQGB034 grain width
39 CQAS72 spikelet density
40 CQAS76 spikelet number
41 CQAS77 seed number
42 CQF8 soluble protein content
43 AQAW028 spikelet number
44 AQBK006 spikelet number
45 CQC5 spikelet number
46 AQEA385 plant height
47 AQEA387 plant height
48 AQEA389 plant height
49 AQEA391 plant height
50 AQEA393 plant height
51 AQEA395 plant height
52 AQEA397 plant height
53 AQEL023 root number
54 AQDU002 cold tolerance
55 AQEE041 head rice
56 AQEE043 cracked grain percentage
57 AQEI066 leaf senescence
58 AQEI113 leaf senescence
59 AQFJ072 grain yield per plant
60 AQGP039 days to heading
61 AQGP083 grain yield
62 CQAA2 leaf rolloing tolerance
63 CQAE11 panicle number
64 CQAF10 gelatinization temperature
65 AQEM002 salt sensitivity
66 CQX19 internode length
67 AQDY085 culm length
68 AQDY102 panicle number
69 AQBM001 callus induction
70 AQAA005 root length
71 CQH24 penetrated root thickness
72 AQEP011 seedling vigor
73 AQDR141 grain yield per panicle
74 AQDR143 grain number
75 AQDS080 plant height
76 AQDS082 plant height
77 AQDS083 plant height
78 AQCV007 grain length
79 AQCV008 grain length

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 PO:0007055 0.0 dry seed (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000100 upper leaf (+)
2 MCP:1000363 fifth leaf from base (+)
3 MCP:1000398 sixth leaf from base (+)
4 PO:0000003 whole plant (+)
5 PO:0008037 seedling (+)
6 PO:0009005 root (+)
7 PO:0009046 flower (+)
8 PO:0009047 stem (+)
9 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000034 superoxide dismutase (SOD) activity (+)
2 MCT:1000035 peroxidase (POD) activity (+)
3 MCT:1000038 catalase (CAT) activity (+)
4 MCT:1000076 leaf growth (+)
5 MCT:1000218 hydrogen peroxide accumulation (+)
6 MCT:1000416 superoxide anion accumulation (+)
7 MCT:1000417 thiobarbituric acid reactive substances (TBARS) content (+)
8 TO:0000280 seedling vigor (+)
9 TO:0000293 chlorophyll-a content (+)
10 TO:0000295 chlorophyll-b content (+)
11 TO:0000495 chlorophyll content (+)
12 TO:0000571 shoot fresh weight (+)
13 TO:0000599 enzyme activity trait (+)
14 TO:0002616 flowering time (+)
15 TO:0010001 percent germination (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Phung Thu-Ha; Jung Sunyo; Perturbed porphyrin biosynthesis contributes to differential herbicidal symptoms in photodynamically stressed rice (Oryza sativa) treated with 5-aminolevulinic acid and oxyfluorfen. Pesticide biochemistry and physiology 2014:116
PMID [25454526]


Xu Sheng; Wang Lijuan; Zhang Bo; Han Bin; Xie Yanjie; Yang Jie; Zhong Weigong; Chen Huiping; Wang Ren; Wang Ning; Cui Weiti; Shen Wenbiao; RNAi knockdown of rice SE5 gene is sensitive to the herbicide methyl viologen by the down-regulation of antioxidant defense. Plant Molecular Biology 2012:
PMID [22829206]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India