Rice gene details
Searching for LOC_Os06g43180 [cyclase family protein, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os06g43180.1 273 58 258 PF04199.5 Cyclase
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  2
N22InfloresenceFC
  -1
N22 Root FC
  2
IR64 Flag-leaf FC
  3
IR64InfloresenceFC
  -1
IR64 Root FC
  -1

Functional details
Molecular Function
Not found
1 GO:0003674 molecular_function (RGAP)
Biological process
Not found
1 GO:0008150 biological_process (RGAP)
Cellular component
Not found

Environment details
Not found

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQBK042 seed number
2 AQBK045 seed set percent
3 AQAP029 brown planthopper resistance
4 AQCU019 plant height
5 AQDZ008 culm thickness
6 AQEB003 1000-seed weight
7 AQEB007 1000-seed weight
8 AQEB012 1000-seed weight
9 AQDZ014 lodging incidence
10 AQFP014 culm length
11 AQCU085 panicle length
12 AQCU135 leaf length
13 AQCU143 leaf width
14 AQCU155 spikelet number
15 AQCU187 days to heading
16 AQFE064 seed set percent
17 AQGM011 panicle length
18 CQAJ14 yield
19 CQAS66 plant height
20 AQEI112 leaf senescence
21 AQEI139 leaf senescence
22 AQEI142 leaf senescence
23 AQBS004 days to heading
24 AQBS033 spikelet number
25 AQGB034 grain width
26 AQBK006 spikelet number
27 CQC5 spikelet number
28 AQEL023 root number
29 AQDU002 cold tolerance
30 AQEE041 head rice
31 AQEE043 cracked grain percentage
32 AQEI066 leaf senescence
33 AQEI113 leaf senescence
34 AQFJ072 grain yield per plant
35 AQGP039 days to heading
36 AQGP083 grain yield
37 CQAA2 leaf rolloing tolerance
38 CQAE11 panicle number
39 CQAF10 gelatinization temperature
40 CQX19 internode length
41 AQDY085 culm length
42 AQDY102 panicle number
43 AQBM001 callus induction
44 AQDR141 grain yield per panicle
45 AQDR143 grain number
46 AQDS080 plant height
47 AQDS082 plant height
48 AQDS083 plant height
49 CQAW21 root number
50 CQAW22 root penetration index
51 CQAR22 spikelet number
52 CQAR23 spikelet density
53 AQAC014 total biomass yield
54 AQAC021 biomass yield
55 AQAG047 1000-seed weight
56 AQCB006 spikelet number
57 AQCB032 spikelets per panicle length
58 AQGI020 root dry weight
59 CQX14 panicle length
60 CQX23 internode length
61 CQX9 culm length
62 AQFA001 amylose content

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000251 pistil/stamen primordium differentiation stage (-)
2 MCP:1000520 young inflorescence stage (-)
3 PO:0007073 2 formation of axillary shoot (-)
4 PO:0007115 LP.04 four leaves visible (-)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0006012 leaf collar (-)
2 PO:0009005 root (-)
3 PO:0009006 shoot system (-)
4 PO:0009029 stamen (-)
5 PO:0009039 glume (-)
6 PO:0009047 stem (-)
7 PO:0009049 inflorescence (-)
8 PO:0009089 endosperm (-)
9 PO:0020103 flag leaf (-)
10 PO:0020104 leaf sheath (-)
11 PO:0025034 leaf (-)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Qin Yonghua; Shen Xin; Wang Nili; Ding Xipeng; Characterization of a novel cyclase-like gene family involved in controlling stress tolerance in rice. Journal of plant physiology 2015:181
PMID [25974367]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India