Rice gene details
Searching for LOC_Os06g45510 [thioredoxin, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os06g45510.1 175 92 170 PF00085.12 Thioredoxin
2 LOC_Os06g45510.2 175 92 170 PF00085.12 Thioredoxin
3 LOC_Os06g45510.3 147 92 124 PF00085.12 Thioredoxin
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  1
N22 Root FC
  1
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
  1
IR64 Root FC
  -1

Functional details
Molecular Function
Not found
1 GO:0003824 catalytic activity (RGAP)
Biological process
Not found
1 GO:0008152 metabolic process (RGAP)
2 GO:0019725 cellular homeostasis (RGAP)
Cellular component
Not found
1 GO:0005739 mitochondrion (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007069 gibberellic acid regimen (-)
2 EO:0007204 1-naphthaleneacetic acid (-)
3 EO:0007290 kinetin regimen (-)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQBK042 seed number
2 AQBK045 seed set percent
3 AQDZ008 culm thickness
4 AQEB003 1000-seed weight
5 AQEB007 1000-seed weight
6 AQEB012 1000-seed weight
7 AQDZ014 lodging incidence
8 AQFP014 culm length
9 CQAJ14 yield
10 CQAS66 plant height
11 AQBK006 spikelet number
12 CQC5 spikelet number
13 CQX19 internode length
14 AQDY102 panicle number
15 AQBM001 callus induction
16 CQAW21 root number
17 CQAW22 root penetration index
18 CQAR22 spikelet number
19 CQAR23 spikelet density
20 AQAC014 total biomass yield
21 AQAC021 biomass yield
22 AQAG047 1000-seed weight
23 AQCB006 spikelet number
24 AQCB032 spikelets per panicle length
25 AQGI020 root dry weight
26 CQX14 panicle length
27 CQX23 internode length
28 CQX9 culm length
29 AQFA001 amylose content
30 AQDY087 panicle length
31 AQDY089 panicle length
32 AQDY091 panicle length
33 AQDY093 panicle length
34 AQDY096 panicle length
35 AQDY098 panicle length
36 AQDY103 panicle number
37 AQDY104 tiller number
38 AQDY105 tiller number
39 AQEK004 iron sensitivity
40 AQEK006 iron sensitivity
41 AQEK008 iron sensitivity
42 AQEK012 iron sensitivity
43 AQAW035 primary branch
44 AQCF035 panicle number
45 AQEJ062 leaf area
46 AQEJ064 leaf width
47 AQEJ066 leaf width
48 AQEE045 cracked grain percentage
49 AQGP049 panicle length
50 AQGP052 panicle number
51 AQGP073 1000-seed weight
52 AQJ006 panicle number
53 AQCU032 leaf width
54 AQCU181 days to heading
55 AQFW008 plant height
56 AQFW117 spikelet number
57 CQAS67 days to heading
58 CQAS70 panicle number
59 CQA13 vegetative growth time
60 CQA14 reproductive growth time

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (-)
2 PO:0007106 LP.03 three leaves visible (-)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0025034 leaf (-)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Nuruzzaman Mohammed; Gupta Madhur; Zhang Chengjun; Wang Lei; Xie Weibo; Xiong Lizhong; Zhang Qifa; Lian Xingming; Sequence and expression analysis of the thioredoxin protein gene family in rice. Molecular genetics and genomics 2008:280
PMID [18491141]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India