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Searching for LOC_Os06g46310
[metal transporter Nramp6, putative, expressed ] |
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Basic information [Pfam DB] |
Graphical representation of the protein domains |
S. No. |
Locus Id |
Protein Length |
Doman Start |
Domain End |
Pfam ID |
Domain Name |
1 |
LOC_Os06g46310.1 |
551 |
70 |
433 |
PF01566.10 |
Nramp |
2 |
LOC_Os06g46310.2 |
551 |
70 |
433 |
PF01566.10 |
Nramp |
3 |
LOC_Os06g46310.3 |
493 |
70 |
375 |
PF01566.10 |
Nramp |
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The basic information is from RGAP and Pfam/InterPro databases |
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Gene model (download) 
IR64 N22
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Gene Expression
(RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC |
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N22InfloresenceFC |
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N22 Root FC |
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IR64 Flag-leaf FC |
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IR64InfloresenceFC |
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IR64 Root FC |
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Functional details
Molecular Function
S. No. |
GO Id |
GO Description |
1 |
GO:0005215 |
transporter activity |
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2 |
GO:0005215 |
transporter activity |
(RGAP) |
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Biological process
Cellular component
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Environment details
S. No. |
EO Id |
EO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
EO:0007387 |
manganese nutrient regimen |
(+) |
2 |
MCE:1000143 |
iron deficiency treatment |
(+) |
3 |
MCE:1000164 |
manganese deficiency treatment |
(+) |
4 |
MCE:1000201 |
ethylene glycol tetraacetic acid (EGTA) |
(+) |
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Metabolic Pathway details
QTL details
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Plant developmental stage / tissue details
Plant development stage
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
MCP:1000518 |
seedling development stage |
(+) |
Plant tissue/organ
Others
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
Not found |
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Trait details
Physical interaction details
Interaction type: protein-protein
Interaction type: protein-DNA
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Related publications [Sorted by year] |
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1 |
Yang Meng; Zhang Wan; Dong Huaxia; Zhang Yuanyuan; Lv Kai; Wang Dujun; Lian Xingming; OsNRAMP3 Is a Vascular Bundles-Specific Manganese Transporter That Is Responsible for Manganese Distribution in Rice. PloS one 2013:8
PMID [24391861]
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