Rice gene details
Searching for LOC_Os06g46310 [metal transporter Nramp6, putative, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os06g46310.1 551 70 433 PF01566.10 Nramp
2 LOC_Os06g46310.2 551 70 433 PF01566.10 Nramp
3 LOC_Os06g46310.3 493 70 375 PF01566.10 Nramp
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  2
N22InfloresenceFC
  -1
N22 Root FC
  -1
IR64 Flag-leaf FC
  -2
IR64InfloresenceFC
  3
IR64 Root FC
  -2

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0005215 transporter activity  
2 GO:0005215 transporter activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0006828 manganese ion transport  
2 GO:0042594 response to starvation  
3 GO:0006810 transport (RGAP)
4 GO:0009987 cellular process (RGAP)
5 GO:0008150 biological_process (RGAP)
6 GO:0019725 cellular homeostasis (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005886 plasma membrane  
2 GO:0005886 plasma membrane (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007387 manganese nutrient regimen (+)
2 MCE:1000143 iron deficiency treatment (+)
3 MCE:1000164 manganese deficiency treatment (+)
4 MCE:1000201 ethylene glycol tetraacetic acid (EGTA) (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQBK042 seed number
2 AQBK045 seed set percent
3 AQDZ014 lodging incidence
4 AQFP014 culm length
5 CQAJ14 yield
6 CQAS66 plant height
7 AQBK006 spikelet number
8 CQC5 spikelet number
9 AQDY102 panicle number
10 CQAW21 root number
11 CQAW22 root penetration index
12 CQAR22 spikelet number
13 CQAR23 spikelet density
14 AQAC014 total biomass yield
15 AQAC021 biomass yield
16 AQAG047 1000-seed weight
17 AQCB006 spikelet number
18 AQCB032 spikelets per panicle length
19 AQGI020 root dry weight
20 CQX14 panicle length
21 CQX23 internode length
22 CQX9 culm length
23 AQFA001 amylose content
24 AQDY087 panicle length
25 AQDY089 panicle length
26 AQDY091 panicle length
27 AQDY093 panicle length
28 AQDY096 panicle length
29 AQDY098 panicle length
30 AQDY103 panicle number
31 AQDY104 tiller number
32 AQDY105 tiller number
33 AQEK004 iron sensitivity
34 AQEK006 iron sensitivity
35 AQEK008 iron sensitivity
36 AQEK012 iron sensitivity
37 AQCF035 panicle number
38 AQEJ062 leaf area
39 AQEJ064 leaf width
40 AQEJ066 leaf width
41 AQEE045 cracked grain percentage
42 AQGP049 panicle length
43 AQGP052 panicle number
44 AQGP073 1000-seed weight
45 AQJ006 panicle number
46 AQCU032 leaf width
47 AQCU181 days to heading
48 AQFW008 plant height
49 AQFW117 spikelet number
50 CQAS67 days to heading
51 CQAS70 panicle number
52 CQA13 vegetative growth time
53 CQA14 reproductive growth time
54 CQE47 chlorophyll content
55 CQX18 internode length

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000314 first leaf from base (+)
2 MCP:1000315 second leaf from base (+)
3 MCP:1000316 third leaf from base (+)
4 MCP:1000362 fourth leaf from base (+)
5 MCP:1000549 first tiller (+)
6 MCP:1000550 second tiller (+)
7 MCP:1000551 third tiller (+)
8 PO:0000003 whole plant (+)
9 PO:0000025 root tip (+)
10 PO:0008037 seedling (+)
11 PO:0009005 root (+)
12 PO:0009006 shoot system (+)
13 PO:0009049 inflorescence (+)
14 PO:0020039 leaf lamina (+)
15 PO:0020104 leaf sheath (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000520 root necrosis (+)
2 MCT:2000012 yeast growth (+)
3 TO:0000019 seedling height (+)
4 TO:0000078 root dry weight (+)
5 TO:0000227 root length (+)
6 TO:0000280 seedling vigor (+)
7 TO:0000552 shoot dry weight (+)
8 TO:0000652 leaf necrosis (+)
9 TO:0006048 manganese concentration (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Yang Meng; Zhang Wan; Dong Huaxia; Zhang Yuanyuan; Lv Kai; Wang Dujun; Lian Xingming; OsNRAMP3 Is a Vascular Bundles-Specific Manganese Transporter That Is Responsible for Manganese Distribution in Rice. PloS one 2013:8
PMID [24391861]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India