Rice gene details
Searching for LOC_Os06g47200 [LTPL85 - Protease inhibitor/seed storage/LTP family protein precursor, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os06g47200.1 151 35 107 PF00234.14 Tryp_alpha_amyl
2 LOC_Os06g47200.2 147 35 107 PF00234.14 Tryp_alpha_amyl
3 LOC_Os06g47200.3 126 35 107 PF00234.14 Tryp_alpha_amyl
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  3
N22InfloresenceFC
  2
N22 Root FC
  1
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  1
IR64 Root FC
  1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0008289 lipid binding (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009739 response to gibberellin stimulus  
2 GO:0006810 transport (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0016020 membrane (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007198 water environment (+)
2 EO:0007204 1-naphthaleneacetic acid (+)
3 MCE:1000023 benzyl aminopurine (BPA) (+)
4 MCE:1000288 GA3 gibberellin (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQBK042 seed number
2 AQBK045 seed set percent
3 AQDZ014 lodging incidence
4 AQFP014 culm length
5 CQAJ14 yield
6 CQAS66 plant height
7 AQBK006 spikelet number
8 CQC5 spikelet number
9 AQDY102 panicle number
10 CQAW21 root number
11 CQAW22 root penetration index
12 CQAR22 spikelet number
13 CQAR23 spikelet density
14 AQAC014 total biomass yield
15 AQAC021 biomass yield
16 AQAG047 1000-seed weight
17 AQCB006 spikelet number
18 AQCB032 spikelets per panicle length
19 AQGI020 root dry weight
20 CQX14 panicle length
21 CQX23 internode length
22 CQX9 culm length
23 AQFA001 amylose content
24 AQDY087 panicle length
25 AQDY089 panicle length
26 AQDY091 panicle length
27 AQDY093 panicle length
28 AQDY096 panicle length
29 AQDY098 panicle length
30 AQDY103 panicle number
31 AQDY104 tiller number
32 AQDY105 tiller number
33 AQEK004 iron sensitivity
34 AQEK006 iron sensitivity
35 AQEK008 iron sensitivity
36 AQEK012 iron sensitivity
37 AQCF035 panicle number
38 AQEJ062 leaf area
39 AQEJ064 leaf width
40 AQEJ066 leaf width
41 AQGP049 panicle length
42 AQGP052 panicle number
43 AQGP073 1000-seed weight
44 AQJ006 panicle number
45 CQAS67 days to heading
46 CQAS70 panicle number
47 CQA13 vegetative growth time
48 CQA14 reproductive growth time
49 CQE47 chlorophyll content
50 CQX18 internode length
51 AQB008 consistency viscosity
52 AQHJ002 root dry weight
53 AQHJ008 root branching
54 AQGM033 grain yield

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000173 inflorescence 5-10cm stage (+)
2 MCP:1000176 inflorescence 22-30cm stage (+)
3 MCP:1000518 seedling development stage (+)
4 MCP:1000521 mature plant stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0008037 seedling (+)
2 PO:0009005 root (+)
3 PO:0009047 stem (+)
4 PO:0009049 inflorescence (+)
5 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Ma Tengfei; Ma Haoli; Zhao Heming; Qi Huandong; Zhao Jie; Identification, characterization, and transcription analysis of xylogen-like arabinogalactan proteins in rice (Oryza sativa L.). BMC plant biology 2014:14
PMID [25407280]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India