Rice gene details
Searching for LOC_Os06g47310 [plant-specific domain TIGR01627 family protein, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os06g47310.1 337 176 326 PF04669.5 DUF579
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  2
N22InfloresenceFC
  -3
N22 Root FC
  3
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
  2
IR64 Root FC
  4

Functional details
Molecular Function
Not found
1 GO:0003674 molecular_function (RGAP)
Biological process
Not found
1 GO:0009058 biosynthetic process (RGAP)
2 GO:0005975 carbohydrate metabolic process (RGAP)
3 GO:0009987 cellular process (RGAP)
Cellular component
Not found
1 GO:0005794 Golgi apparatus (RGAP)

Environment details
Not found

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQBK042 seed number
2 AQBK045 seed set percent
3 AQDZ014 lodging incidence
4 AQFP014 culm length
5 CQAS66 plant height
6 AQBK006 spikelet number
7 CQC5 spikelet number
8 AQDY102 panicle number
9 CQAW21 root number
10 CQAW22 root penetration index
11 CQAR22 spikelet number
12 CQAR23 spikelet density
13 CQX14 panicle length
14 CQX23 internode length
15 CQX9 culm length
16 AQFA001 amylose content
17 AQDY087 panicle length
18 AQDY089 panicle length
19 AQDY091 panicle length
20 AQDY093 panicle length
21 AQDY096 panicle length
22 AQDY098 panicle length
23 AQDY103 panicle number
24 AQDY104 tiller number
25 AQDY105 tiller number
26 AQEK004 iron sensitivity
27 AQEK006 iron sensitivity
28 AQEK008 iron sensitivity
29 AQEK012 iron sensitivity
30 AQCF035 panicle number
31 AQEJ062 leaf area
32 AQEJ064 leaf width
33 AQEJ066 leaf width
34 AQGP049 panicle length
35 AQGP052 panicle number
36 AQGP073 1000-seed weight
37 AQJ006 panicle number
38 CQAS67 days to heading
39 CQAS70 panicle number
40 CQA13 vegetative growth time
41 CQA14 reproductive growth time
42 CQE47 chlorophyll content
43 CQX18 internode length
44 AQB008 consistency viscosity
45 AQHJ002 root dry weight
46 AQHJ008 root branching
47 AQGM033 grain yield
48 AQCY017 1000-seed weight
49 AQGI055 root dry weight
50 AQGI179 biomass yield
51 AQBG012 white-backed planthopper resistance
52 AQBJ004 large vascular bundle number
53 AQBJ011 large vascular bundle number
54 AQBJ013 large vascular bundle number

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0008037 seedling (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Zhang Jie; Liu Xiaoqiang; Li Shuyu; Cheng Zhukuan; Li Chuanyou; The Rice Semi-Dwarf Mutant sd37, Caused by a Mutation in CYP96B4, Plays an Important Role in the Fine-Tuning of Plant Growth. PloS one 2014:9
PMID [24498428]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India