Rice gene details
Searching for LOC_Os06g47940 [nifU, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os06g47940.1 220 73 140 PF01106.9 NifU
2 LOC_Os06g47940.1 220 154 218 PF01106.9 NifU
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -1
N22InfloresenceFC
  1
N22 Root FC
  4
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
  1
IR64 Root FC
  2

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0005198 structural molecule activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009412 response to heavy metal  
2 GO:0010044 response to aluminum ion  
3 GO:0010288 response to lead ion  
4 GO:0046686 response to cadmium ion  
5 GO:0009058 biosynthetic process (RGAP)
6 GO:0009987 cellular process (RGAP)
7 GO:0016043 cellular component organization (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0009536 plastid (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007223 cadmium chloride (+)
2 MCE:1000138 lead nitrate regimen (+)
3 MCE:1000222 aluminium chloride regimen (AlCl3) (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQBK042 seed number
2 AQBK045 seed set percent
3 AQFP014 culm length
4 CQAS66 plant height
5 AQBK006 spikelet number
6 CQC5 spikelet number
7 AQDY102 panicle number
8 CQAW21 root number
9 CQAW22 root penetration index
10 CQAR22 spikelet number
11 CQAR23 spikelet density
12 CQX14 panicle length
13 CQX23 internode length
14 CQX9 culm length
15 AQFA001 amylose content
16 AQDY087 panicle length
17 AQDY089 panicle length
18 AQDY091 panicle length
19 AQDY093 panicle length
20 AQDY096 panicle length
21 AQDY098 panicle length
22 AQDY103 panicle number
23 AQDY104 tiller number
24 AQDY105 tiller number
25 AQEK004 iron sensitivity
26 AQEK006 iron sensitivity
27 AQEK008 iron sensitivity
28 AQEK012 iron sensitivity
29 AQCF035 panicle number
30 AQEJ062 leaf area
31 AQEJ064 leaf width
32 AQEJ066 leaf width
33 AQGP049 panicle length
34 AQGP052 panicle number
35 AQGP073 1000-seed weight
36 AQJ006 panicle number
37 CQAS67 days to heading
38 CQAS70 panicle number
39 CQE47 chlorophyll content
40 CQX18 internode length
41 AQB008 consistency viscosity
42 AQHJ002 root dry weight
43 AQHJ008 root branching
44 AQGM033 grain yield
45 AQBG012 white-backed planthopper resistance
46 AQBJ004 large vascular bundle number
47 AQBJ011 large vascular bundle number
48 AQBJ013 large vascular bundle number
49 CQAD4 allelopathic effect
50 AQHR047 plant height

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009005 root (+)
2 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Liang Xuejiao; Qin Lu; Liu Peiwei; Wang Meihuan; Ye Hong; Genes for iron-sulphur cluster assembly are targets of abiotic stress in rice, Oryza sativa. Plant, cell & environment 2014:37
PMID [24028141]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India