Rice gene details
Searching for LOC_Os06g49110 [delta-aminolevulinic acid dehydratase, chloroplast precursor, putative, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os06g49110.1 427 98 420 PF00490.13 ALAD
2 LOC_Os06g49110.2 366 98 365 PF00490.13 ALAD
3 LOC_Os06g49110.3 427 98 420 PF00490.13 ALAD
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  4
N22InfloresenceFC
  3
N22 Root FC
  -1
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  -1
IR64 Root FC
  -1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0005488 binding (RGAP)
2 GO:0003824 catalytic activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009635 response to herbicide  
2 GO:0008152 metabolic process (RGAP)
3 GO:0009058 biosynthetic process (RGAP)
4 GO:0009987 cellular process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0009536 plastid (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 MCE:1000351 5-aminolevulinic acid (+)
2 MCE:1000352 oxyfluorfen (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 PWY-5188 tetrapyrrole biosynthesis I

QTL details
S. No. QTL Id QTL Associated Trait
1 AQBK042 seed number
2 AQBK045 seed set percent
3 AQFP014 culm length
4 AQBK006 spikelet number
5 CQC5 spikelet number
6 AQDY102 panicle number
7 CQX14 panicle length
8 CQX23 internode length
9 CQX9 culm length
10 AQFA001 amylose content
11 AQDY087 panicle length
12 AQDY089 panicle length
13 AQDY091 panicle length
14 AQDY093 panicle length
15 AQDY096 panicle length
16 AQDY098 panicle length
17 AQDY103 panicle number
18 AQDY104 tiller number
19 AQDY105 tiller number
20 AQEK004 iron sensitivity
21 AQEK006 iron sensitivity
22 AQEK008 iron sensitivity
23 AQEK012 iron sensitivity
24 CQE47 chlorophyll content
25 CQX18 internode length
26 AQB008 consistency viscosity
27 AQHJ002 root dry weight
28 AQHJ008 root branching
29 AQBG012 white-backed planthopper resistance
30 AQBJ004 large vascular bundle number
31 AQBJ011 large vascular bundle number
32 AQBJ013 large vascular bundle number
33 CQAD4 allelopathic effect
34 AQHR047 plant height
35 AQBY008 root to shoot ratio
36 AQDK004 ratooning ability
37 AQAC035 alpha amylase activity
38 AQAI065 large vascular bundle number to spikelet number ratio
39 AQBZ012 plant height
40 AQCB022 panicle length
41 AQCQ013 grain number
42 AQCY003 grain yield
43 AQEY020 1000-seed weight
44 AQGI059 root dry weight
45 AQGI060 root dry weight
46 AQGI117 biomass yield
47 AQGI122 biomass yield
48 AQGI181 biomass yield
49 AQAQ004 blast disease resistance
50 AQAQ013 blast disease resistance
51 AQAQ021 blast disease resistance
52 AQCU041 spikelet number
53 AQCU243 spikelet number
54 AQFW114 spikelet number
55 AQFW224 leaf width
56 CQAS78 yield
57 AQBK023 plant height
58 AQBK038 spikelet number

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Phung Thu-Ha; Jung Sunyo; Perturbed porphyrin biosynthesis contributes to differential herbicidal symptoms in photodynamically stressed rice (Oryza sativa) treated with 5-aminolevulinic acid and oxyfluorfen. Pesticide biochemistry and physiology 2014:116
PMID [25454526]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India