Rice gene details
Searching for LOC_Os06g51220 [HMG1/2, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os06g51220.2 158 42 111 PF00505.11 HMG_box
2 LOC_Os06g51220.3 158 42 111 PF00505.11 HMG_box
3 LOC_Os06g51220.4 158 42 111 PF00505.11 HMG_box
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
 
N22InfloresenceFC
 
N22 Root FC
 
IR64 Flag-leaf FC
 
IR64InfloresenceFC
 
IR64 Root FC
 

Functional details
Molecular Function
Not found
1 GO:0003677 DNA binding (RGAP)
2 GO:0005198 structural molecule activity (RGAP)
3 GO:0003682 chromatin binding (RGAP)
4 GO:0003700 sequence-specific DNA binding transcription factor activity (RGAP)
Biological process
Not found
1 GO:0016043 cellular component organization (RGAP)
2 GO:0009987 cellular process (RGAP)
3 GO:0009058 biosynthetic process (RGAP)
4 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
Cellular component
Not found
1 GO:0005634 nucleus (RGAP)
2 GO:0005622 intracellular (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007024 aerobic environment (+)
2 MCE:1000195 hypoxic environment (+)
3 MCE:1000330 nitrogen flushing (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQE47 chlorophyll content

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000422 cortical parenchyma cell (+)
2 MCP:1000559 long adventitious root (+)
3 MCP:1000560 short adventitious root (+)
4 PO:0005427 sclerenchyma (+)
5 PO:0005772 exodermis (+)
6 PO:0020124 root stele (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Shiono Katsuhiro; Yamauchi Takaki; Yamazaki So; Mohanty Bijayalaxmi; Malik Al Imran; Nagamura Yoshiaki; Nishizawa Naoko K; Tsutsumi Nobuhiro; Colmer Timothy D; Nakazono Mikio; Microarray analysis of laser-microdissected tissues indicates the biosynthesis of suberin in the outer part of roots during formation of a barrier to radial oxygen loss in rice (Oryza sativa). Journal of experimental botany 2014:65
PMID [24913626]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India