|
Searching for LOC_Os07g01090 
[transmembrane amino acid transporter protein, putative, expressed ] |
|
|
|
| Basic information [Pfam DB] |
Graphical representation of the protein domains |
| S. No. |
Locus Id |
Protein Length |
Doman Start |
Domain End |
Pfam ID |
Domain Name |
| 1 |
LOC_Os07g01090.1 |
435 |
20 |
420 |
PF01490.10 |
Aa_trans |
| 2 |
LOC_Os07g01090.2 |
385 |
1 |
370 |
PF01490.10 |
Aa_trans |
| |
The basic information is from RGAP and Pfam/InterPro databases |
|
|
Gene model (download) 
IR64 N22
|
Gene Expression
(RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
| N22 Flag-leaf FC |
|
| N22InfloresenceFC |
|
| N22 Root FC |
|
| IR64 Flag-leaf FC |
|
| IR64InfloresenceFC |
|
| IR64 Root FC |
|
|
|
Functional details
Molecular Function
| Not found |
| 1 |
GO:0005215 |
transporter activity |
(RGAP) |
|
Biological process
Cellular component
|
Environment details
| S. No. |
EO Id |
EO Description |
Presence(+) or absence(-) of gene expression /activity |
| 1 |
EO:0007048 |
sodium chloride regimen |
(+) |
| 2 |
EO:0007174 |
cold temperature regimen |
(+) |
| 3 |
EO:0007332 |
cold air temperature regimen |
(+) |
| 4 |
EO:0007404 |
drought environment |
(+) |
|
Metabolic Pathway details
QTL details
|
Plant developmental stage / tissue details
Plant development stage
| S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
| 1 |
MCP:1000518 |
seedling development stage |
(+) |
Plant tissue/organ
| S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
| 1 |
PO:0000003 |
whole plant |
(+) |
| 2 |
PO:0008037 |
seedling |
(+) |
| 3 |
PO:0025034 |
leaf |
(+) |
Others
| S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
| Not found |
|
Trait details
Physical interaction details
|
Interaction type: protein-protein
Interaction type: protein-DNA
|
|
| Related publications [Sorted by year] |
|
| 1 |
Xu Peipei; Cai Weiming; RAN1 is involved in plant cold resistance and development in rice (Oryza sativa). Journal of experimental botany 2014:65
PMID [24790113]
|
|
|
| 2 |
Yang An; Dai Xiaoyan; Zhang Wen-Hao; A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice. Journal of Experimental Botany 2012:
PMID [22301384]
|
|
|
| 3 |
Song Shi-Yong; Chen Ying; Chen Jie; Dai Xiao-Yan; Zhang Wen-Hao; Physiological mechanisms underlying OsNAC5-dependent tolerance of rice plants to abiotic stress. Planta 2011:
PMID [21448719]
|
|
|
| 4 |
Xiang Yong; Huang Yuemin; Xiong Lizhong; Characterization of stress-responsive CIPK genes in rice for stress tolerance improvement. Plant Physiology 2007:144
PMID [17535819]
|
|
|
|
