Rice gene details
Searching for LOC_Os07g01090 [transmembrane amino acid transporter protein, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os07g01090.1 435 20 420 PF01490.10 Aa_trans
2 LOC_Os07g01090.2 385 1 370 PF01490.10 Aa_trans
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  3
N22InfloresenceFC
  -1
N22 Root FC
  11
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  1
IR64 Root FC
  -4

Functional details
Molecular Function
Not found
1 GO:0005215 transporter activity (RGAP)
Biological process
Not found
1 GO:0006810 transport (RGAP)
2 GO:0009987 cellular process (RGAP)
Cellular component
Not found
1 GO:0016020 membrane (RGAP)
2 GO:0005886 plasma membrane (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007174 cold temperature regimen (+)
3 EO:0007332 cold air temperature regimen (+)
4 EO:0007404 drought environment (+)

Metabolic Pathway details
Not found

QTL details
Not found

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000003 whole plant (+)
2 PO:0008037 seedling (+)
3 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Xu Peipei; Cai Weiming; RAN1 is involved in plant cold resistance and development in rice (Oryza sativa). Journal of experimental botany 2014:65
PMID [24790113]


Yang An; Dai Xiaoyan; Zhang Wen-Hao; A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice. Journal of Experimental Botany 2012:
PMID [22301384]


Song Shi-Yong; Chen Ying; Chen Jie; Dai Xiao-Yan; Zhang Wen-Hao; Physiological mechanisms underlying OsNAC5-dependent tolerance of rice plants to abiotic stress. Planta 2011:
PMID [21448719]


Xiang Yong; Huang Yuemin; Xiong Lizhong; Characterization of stress-responsive CIPK genes in rice for stress tolerance improvement. Plant Physiology 2007:144
PMID [17535819]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India