Rice gene details
Searching for LOC_Os07g01340 [gibberellin 2-beta-dioxygenase 7, putative, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os07g01340.1 342 189 290 PF03171.12 2OG-FeII_Oxy
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  2
N22InfloresenceFC
  5
N22 Root FC
  -1
IR64 Flag-leaf FC
  4
IR64InfloresenceFC
  -1
IR64 Root FC
  2

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003824 catalytic activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009629 response to gravity  
2 GO:0009651 response to salt stress  
3 GO:0009739 response to gibberellin stimulus  
4 GO:0042538 hyperosmotic salinity response  
5 GO:0009987 cellular process (RGAP)
6 GO:0006629 lipid metabolic process (RGAP)
7 GO:0008152 metabolic process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005634 nucleus  
2 GO:0005737 cytoplasm  
3 GO:0005575 cellular_component (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007146 gravity (+)
3 EO:0007198 water environment (+)
4 MCE:1000288 GA3 gibberellin (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 PWY-1081 homogalacturonan degradation
2 PWY-5035 gibberellin biosynthesis III (early C-13 hydroxylation)
3 PWY-5036 gibberellin biosynthesis II (early C-3 hydroxylation)
4 PWY-5070 gibberellin biosynthesis I (non C-3, non C-13 hydroxylation)

QTL details
Not found

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000204 5 days post-anthesis stage (+)
2 MCP:1000330 pre-anthesis stage (+)
3 MCP:1000376 15 days post-anthesis stage (+)
4 MCP:1000454 10 days post-anthesis stage (+)
5 MCP:1000473 20 days post-anthesis stage (+)
6 MCP:1000477 25 days post-anthesis stage (+)
7 MCP:1000505 30 days post-anthesis stage (+)
8 MCP:1000518 seedling development stage (+)
9 MCP:1000520 young inflorescence stage (+)
10 PO:0007022 imbibition (+)
11 PO:0007616 4 anthesis (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000315 second leaf from base (+)
2 PO:0000003 whole plant (+)
3 PO:0003017 root cap of primary root (+)
4 PO:0008037 seedling (+)
5 PO:0009005 root (+)
6 PO:0009010 seed (+)
7 PO:0009047 stem (+)
8 PO:0009049 inflorescence (+)
9 PO:0020104 leaf sheath (+)
10 PO:0020123 root cap (+)
11 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000012 survival rate (+)
2 MCT:1000169 relative number of cell layers (+)
3 MCT:1000380 delayed flowering (+)
4 MCT:1000563 root curvature (+)
5 TO:0000019 seedling height (+)
6 TO:0000207 plant height (+)
7 TO:0000227 root length (+)
8 TO:0000272 plant survivability (+)
9 TO:0000280 seedling vigor (+)
10 TO:0000696 starch content (+)
11 TO:0002693 gravity response trait (+)
12 TO:0020107 plant cell length (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Liu Yang; Fang Jun; Xu Fan; Chu Jinfang; Yan Cunyu; Schläppi Michael R; Wang Youping; Chu Chengcai; Expression patterns of ABA and GA metabolism genes and hormone levels during rice seed development and imbibition: a comparison of dormant and non-dormant rice cultivars. Journal of genetics and genomics = Yi chuan xue bao 2014:41
PMID [24976122]


2  Shan Chi; Mei Zhiling; Duan Jianli; Chen Haiying; Feng Huafeng; Cai Weiming; OsGA2ox5, a Gibberellin Metabolism Enzyme, Is Involved in Plant Growth, the Root Gravity Response and Salt Stress. PloS one 2014:9
PMID [24475234]


3  Zhang Jie; Liu Xiaoqiang; Li Shuyu; Cheng Zhukuan; Li Chuanyou; The Rice Semi-Dwarf Mutant sd37, Caused by a Mutation in CYP96B4, Plays an Important Role in the Fine-Tuning of Plant Growth. PloS one 2014:9
PMID [24498428]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India