Rice gene details
Searching for LOC_Os07g05360 [photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os07g05360.1 138 40 138 PF04725.4 PsbR
2 LOC_Os07g05360.2 84 40 71 PF04725.4 PsbR
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -2
N22InfloresenceFC
  5
N22 Root FC
  6
IR64 Flag-leaf FC
  5
IR64InfloresenceFC
  2
IR64 Root FC
  -1

Functional details
Molecular Function
Not found
1 GO:0003674 molecular_function (RGAP)
Biological process
Not found
1 GO:0016043 cellular component organization (RGAP)
2 GO:0006091 generation of precursor metabolites and energy (RGAP)
3 GO:0015979 photosynthesis (RGAP)
Cellular component
Not found
1 GO:0016020 membrane (RGAP)
2 GO:0009536 plastid (RGAP)
3 GO:0009579 thylakoid (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007024 aerobic environment (+)
2 EO:0007068 ethylene regimen (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQGD029 pericarp color
2 AQGD030 pericarp color
3 AQGD028 pericarp color
4 CQE48 plant height
5 CQE49 plant height
6 CQE50 specific leaf area
7 CQN16 soluble protein content
8 CQN35 leaf senescence
9 CQN36 leaf senescence
10 AQED046 1000-seed weight
11 AQEE024 colored grain percentage
12 AQEE026 colored grain percentage
13 AQEE028 colored grain percentage
14 AQEE030 colored grain percentage
15 AQEE032 colored grain percentage
16 AQEE034 colored grain percentage
17 AQEE036 colored grain percentage
18 AQEE038 colored grain percentage
19 CQAS81 days to maturity
20 AQED003 days to heading
21 AQEE007 colored grain percentage
22 AQEE010 colored grain percentage
23 CQAW24 root number
24 CQAX8 plant height
25 CQAS91 yield
26 AQF048 awn length
27 AQF079 grain yield
28 AQFA017 brown rice yield
29 AQF068 anther length
30 CQAH33 seed dormancy
31 CQA15 days to heading
32 CQA16 vegetative growth time
33 CQA17 reproductive growth time
34 AQBP004 gel consistency
35 AQAC008 germination speed
36 AQAF031 blast disease resistance
37 AQAF032 blast disease resistance
38 AQAG048 1000-seed weight
39 AQCB013 filled grain number
40 AQCQ018 1000-seed weight
41 AQCQ025 grain yield per plant
42 AQCQ041 1000-seed weight
43 AQEY012 1000-seed weight
44 AQEY018 1000-seed weight
45 AQGE011 grain width
46 AQGI230 total biomass yield
47 AQY003 plant height
48 CQAJ1 yield
49 CQAJ12 grain weight
50 CQAJ18 tiller number
51 CQAJ27 grain weight
52 CQAJ5 tiller number
53 CQAJ8 grain number
54 CQAL25 grain length

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000058 etiolated seedling (+)
2 PO:0009006 shoot system (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Ma Biao; Yin Cui-Cui; He Si-Jie; Lu Xiang; Zhang Wan-Ke; Lu Tie-Gang; Chen Shou-Yi; Zhang Jin-Song; Ethylene-induced inhibition of root growth requires abscisic acid function in rice (Oryza sativa L.) seedlings. PLoS genetics 2014:10
PMID [25330236]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India