Rice gene details
Searching for LOC_Os07g07790 [LTPL75 - Protease inhibitor/seed storage/LTP family protein precursor, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os07g07790.1 189 39 116 PF00234.14 Tryp_alpha_amyl
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
 
N22InfloresenceFC
 
N22 Root FC
  -126
IR64 Flag-leaf FC
  -1
IR64InfloresenceFC
 
IR64 Root FC
  -8

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0008289 lipid binding (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009739 response to gibberellin stimulus  
2 GO:0006810 transport (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0016020 membrane (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007024 aerobic environment (+)
2 EO:0007198 water environment (+)
3 EO:0007204 1-naphthaleneacetic acid (+)
4 MCE:1000023 benzyl aminopurine (BPA) (+)
5 MCE:1000195 hypoxic environment (+)
6 MCE:1000288 GA3 gibberellin (+)
7 MCE:1000330 nitrogen flushing (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQGD029 pericarp color
2 AQGD030 pericarp color
3 AQGD028 pericarp color
4 CQE48 plant height
5 CQE49 plant height
6 CQE50 specific leaf area
7 CQN16 soluble protein content
8 CQN35 leaf senescence
9 CQN36 leaf senescence
10 AQED046 1000-seed weight
11 AQEE024 colored grain percentage
12 AQEE026 colored grain percentage
13 AQEE028 colored grain percentage
14 AQEE030 colored grain percentage
15 AQEE032 colored grain percentage
16 AQEE034 colored grain percentage
17 AQEE036 colored grain percentage
18 AQEE038 colored grain percentage
19 CQAS81 days to maturity
20 AQED003 days to heading
21 AQEE007 colored grain percentage
22 AQEE010 colored grain percentage
23 CQAW24 root number
24 CQAX8 plant height
25 CQAS91 yield
26 AQFA017 brown rice yield
27 AQF068 anther length
28 CQAH33 seed dormancy
29 AQBP004 gel consistency
30 AQAC008 germination speed
31 AQAF031 blast disease resistance
32 AQAF032 blast disease resistance
33 AQAG048 1000-seed weight
34 AQCB013 filled grain number
35 AQCQ018 1000-seed weight
36 AQCQ025 grain yield per plant
37 AQCQ041 1000-seed weight
38 AQEY012 1000-seed weight
39 AQEY018 1000-seed weight
40 AQGE011 grain width
41 AQGI230 total biomass yield
42 AQY003 plant height
43 CQAJ1 yield
44 CQAJ12 grain weight
45 CQAJ18 tiller number
46 CQAJ27 grain weight
47 CQAJ5 tiller number
48 CQAJ8 grain number
49 CQAL25 grain length
50 CQE51 space
51 CQE52 space to culm ratio
52 AQEM004 salt sensitivity
53 AQEM005 salt sensitivity
54 AQEM010 salt sensitivity
55 AQEM011 salt sensitivity
56 CQAD5 allelopathic effect

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000173 inflorescence 5-10cm stage (+)
2 MCP:1000176 inflorescence 22-30cm stage (+)
3 MCP:1000518 seedling development stage (+)
4 MCP:1000521 mature plant stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000559 long adventitious root (+)
2 MCP:1000560 short adventitious root (+)
3 PO:0005427 sclerenchyma (+)
4 PO:0005772 exodermis (+)
5 PO:0008037 seedling (+)
6 PO:0009005 root (+)
7 PO:0009047 stem (+)
8 PO:0009049 inflorescence (+)
9 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Ma Tengfei; Ma Haoli; Zhao Heming; Qi Huandong; Zhao Jie; Identification, characterization, and transcription analysis of xylogen-like arabinogalactan proteins in rice (Oryza sativa L.). BMC plant biology 2014:14
PMID [25407280]


Shiono Katsuhiro; Yamauchi Takaki; Yamazaki So; Mohanty Bijayalaxmi; Malik Al Imran; Nagamura Yoshiaki; Nishizawa Naoko K; Tsutsumi Nobuhiro; Colmer Timothy D; Nakazono Mikio; Microarray analysis of laser-microdissected tissues indicates the biosynthesis of suberin in the outer part of roots during formation of a barrier to radial oxygen loss in rice (Oryza sativa). Journal of experimental botany 2014:65
PMID [24913626]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India