Rice gene details
Searching for LOC_Os07g08050 [expressed protein ]

Basic information [Interpro DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Interpro ID Domain Name
1 LOC_Os07g08050.1 675 9 313 IPR016024 ARM repeat
2 LOC_Os07g08050.1 675 139 369 DNA REPAIR/TRANSCRIPTION PROTEIN MET18/MMS19
3 LOC_Os07g08050.1 675 267 286 seg
4 LOC_Os07g08050.1 675 653 665 seg
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  2
N22InfloresenceFC
  -2
N22 Root FC
  4
IR64 Flag-leaf FC
  8
IR64InfloresenceFC
  -2
IR64 Root FC
  -1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0005488 binding (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0006950 response to stress  
2 GO:0006979 response to oxidative stress  
3 GO:0009412 response to heavy metal  
4 GO:0046686 response to cadmium ion  
Cellular component
S. No. GO Id GO Description
1 GO:0005575 cellular_component (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007223 cadmium chloride (+)
2 MCE:1000008 methyl viologen (MV) (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQGD029 pericarp color
2 AQGD030 pericarp color
3 AQGD028 pericarp color
4 CQE48 plant height
5 CQE49 plant height
6 CQE50 specific leaf area
7 CQN16 soluble protein content
8 CQN35 leaf senescence
9 CQN36 leaf senescence
10 AQED046 1000-seed weight
11 AQEE024 colored grain percentage
12 AQEE026 colored grain percentage
13 AQEE028 colored grain percentage
14 AQEE030 colored grain percentage
15 AQEE032 colored grain percentage
16 AQEE034 colored grain percentage
17 AQEE036 colored grain percentage
18 AQEE038 colored grain percentage
19 CQAS81 days to maturity
20 AQED003 days to heading
21 AQEE007 colored grain percentage
22 AQEE010 colored grain percentage
23 CQAW24 root number
24 CQAX8 plant height
25 CQAS91 yield
26 AQF068 anther length
27 CQAH33 seed dormancy
28 AQBP004 gel consistency
29 AQAC008 germination speed
30 AQAF031 blast disease resistance
31 AQAF032 blast disease resistance
32 AQAG048 1000-seed weight
33 AQCB013 filled grain number
34 AQCQ018 1000-seed weight
35 AQCQ025 grain yield per plant
36 AQCQ041 1000-seed weight
37 AQEY012 1000-seed weight
38 AQEY018 1000-seed weight
39 AQGE011 grain width
40 AQGI230 total biomass yield
41 AQY003 plant height
42 CQAJ1 yield
43 CQAJ12 grain weight
44 CQAJ18 tiller number
45 CQAJ27 grain weight
46 CQAJ5 tiller number
47 CQAJ8 grain number
48 CQAL25 grain length
49 CQE51 space
50 CQE52 space to culm ratio
51 AQEM004 salt sensitivity
52 AQEM005 salt sensitivity
53 AQEM010 salt sensitivity
54 AQEM011 salt sensitivity
55 CQAD5 allelopathic effect
56 AQBL003 potassium sensitivity
57 CQAE4 days to heading
58 CQQ34 root weight
59 AQBC053 panicle tiller ratio
60 AQBC054 panicle tiller ratio
61 AQBX015 panicle weight
62 AQBX016 panicle weight
63 AQBX017 panicle weight
64 AQBX032 panicle weight
65 AQBX033 panicle weight
66 AQBX034 panicle weight
67 DQE40 relative growth rate

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009005 root (+)
2 PO:0025034 leaf (-)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Liang Xuejiao; Qin Lu; Liu Peiwei; Wang Meihuan; Ye Hong; Genes for iron-sulphur cluster assembly are targets of abiotic stress in rice, Oryza sativa. Plant, cell & environment 2014:37
PMID [24028141]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India