Rice gene details Home Browse Search Contact Us Feedback Links Searching for LOC_Os07g08050 [expressed protein ] Basic information [Interpro DB] Graphical representation of the protein domains S. No. Locus Id Protein Length Doman Start Domain End Interpro ID Domain Name 1 LOC_Os07g08050.1 675 9 313 IPR016024 ARM repeat 2 LOC_Os07g08050.1 675 139 369 DNA REPAIR/TRANSCRIPTION PROTEIN MET18/MMS19 3 LOC_Os07g08050.1 675 267 286 seg 4 LOC_Os07g08050.1 675 653 665 seg   The basic information is from RGAP and Pfam/InterPro databases Gene model (download) IR64 N22 Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change] N22 Flag-leaf FC   2 N22InfloresenceFC   -2 N22 Root FC   4 IR64 Flag-leaf FC   8 IR64InfloresenceFC   -2 IR64 Root FC   -1 Functional details Molecular Function S. No. GO Id GO Description 1 GO:0005488 binding (RGAP) Biological process S. No. GO Id GO Description 1 GO:0006950 response to stress   2 GO:0006979 response to oxidative stress   3 GO:0009412 response to heavy metal   4 GO:0046686 response to cadmium ion   Cellular component S. No. GO Id GO Description 1 GO:0005575 cellular_component (RGAP) Environment details S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity 1 EO:0007223 cadmium chloride (+) 2 MCE:1000008 methyl viologen (MV) (+) Metabolic Pathway details Not found QTL details S. No. QTL Id QTL Associated Trait 1 AQGD029 pericarp color 2 AQGD030 pericarp color 3 AQGD028 pericarp color 4 CQE48 plant height 5 CQE49 plant height 6 CQE50 specific leaf area 7 CQN16 soluble protein content 8 CQN35 leaf senescence 9 CQN36 leaf senescence 10 AQED046 1000-seed weight 11 AQEE024 colored grain percentage 12 AQEE026 colored grain percentage 13 AQEE028 colored grain percentage 14 AQEE030 colored grain percentage 15 AQEE032 colored grain percentage 16 AQEE034 colored grain percentage 17 AQEE036 colored grain percentage 18 AQEE038 colored grain percentage 19 CQAS81 days to maturity 20 AQED003 days to heading 21 AQEE007 colored grain percentage 22 AQEE010 colored grain percentage 23 CQAW24 root number 24 CQAX8 plant height 25 CQAS91 yield 26 AQF068 anther length 27 CQAH33 seed dormancy 28 AQBP004 gel consistency 29 AQAC008 germination speed 30 AQAF031 blast disease resistance 31 AQAF032 blast disease resistance 32 AQAG048 1000-seed weight 33 AQCB013 filled grain number 34 AQCQ018 1000-seed weight 35 AQCQ025 grain yield per plant 36 AQCQ041 1000-seed weight 37 AQEY012 1000-seed weight 38 AQEY018 1000-seed weight 39 AQGE011 grain width 40 AQGI230 total biomass yield 41 AQY003 plant height 42 CQAJ1 yield 43 CQAJ12 grain weight 44 CQAJ18 tiller number 45 CQAJ27 grain weight 46 CQAJ5 tiller number 47 CQAJ8 grain number 48 CQAL25 grain length 49 CQE51 space 50 CQE52 space to culm ratio 51 AQEM004 salt sensitivity 52 AQEM005 salt sensitivity 53 AQEM010 salt sensitivity 54 AQEM011 salt sensitivity 55 CQAD5 allelopathic effect 56 AQBL003 potassium sensitivity 57 CQAE4 days to heading 58 CQQ34 root weight 59 AQBC053 panicle tiller ratio 60 AQBC054 panicle tiller ratio 61 AQBX015 panicle weight 62 AQBX016 panicle weight 63 AQBX017 panicle weight 64 AQBX032 panicle weight 65 AQBX033 panicle weight 66 AQBX034 panicle weight 67 DQE40 relative growth rate Plant developmental stage / tissue details Plant development stage S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity 1 MCP:1000518 seedling development stage (+) Plant tissue/organ S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity 1 PO:0009005 root (+) 2 PO:0025034 leaf (-) Others S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity Not found Trait details Not found Physical interaction details Interaction type: protein-protein Not found Interaction type: protein-DNA Not found Related publications [Sorted by year] 1  Liang Xuejiao; Qin Lu; Liu Peiwei; Wang Meihuan; Ye Hong; Genes for iron-sulphur cluster assembly are targets of abiotic stress in rice, Oryza sativa. Plant, cell & environment 2014:37 PMID [24028141] Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India