Rice gene details
Searching for LOC_Os07g08500 [C-5 cytosine-specific DNA methylase, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os07g08500.1 378 79 370 PF00145.9 DNA_methylase
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
N22 Root FC
IR64 Flag-leaf FC
IR64 Root FC

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0016740 transferase activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0006970 response to osmotic stress  
2 GO:0040029 regulation of gene expression, epigenetic (RGAP)
3 GO:0006259 DNA metabolic process (RGAP)
4 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
5 GO:0009908 flower development (RGAP)
6 GO:0008150 biological_process (RGAP)
7 GO:0008152 metabolic process (RGAP)
8 GO:0009987 cellular process (RGAP)
9 GO:0000003 reproduction (RGAP)
10 GO:0009791 post-embryonic development (RGAP)
11 GO:0009790 embryo development (RGAP)
12 GO:0007049 cell cycle (RGAP)
Cellular component
S. No. GO Id GO Description

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007332 cold air temperature regimen (+)
3 MCE:1000016 polyethylene glycol (PEG) treatment (+)
4 MCE:1000069 dessication/dehydration stress (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQGD029 pericarp color
2 AQGD030 pericarp color
3 AQGD028 pericarp color
4 CQE48 plant height
5 CQE49 plant height
6 CQE50 specific leaf area
7 CQN16 soluble protein content
8 CQN35 leaf senescence
9 CQN36 leaf senescence
10 AQED046 1000-seed weight
11 AQEE024 colored grain percentage
12 AQEE026 colored grain percentage
13 AQEE028 colored grain percentage
14 AQEE030 colored grain percentage
15 AQEE032 colored grain percentage
16 AQEE034 colored grain percentage
17 AQEE036 colored grain percentage
18 AQEE038 colored grain percentage
19 CQAS81 days to maturity
20 AQED003 days to heading
21 AQEE007 colored grain percentage
22 AQEE010 colored grain percentage
23 CQAW24 root number
24 CQAX8 plant height
25 CQAS91 yield
26 AQF068 anther length
27 CQAH33 seed dormancy
28 AQBP004 gel consistency
29 AQAC008 germination speed
30 AQAF031 blast disease resistance
31 AQAF032 blast disease resistance
32 AQAG048 1000-seed weight
33 AQCB013 filled grain number
34 AQCQ018 1000-seed weight
35 AQCQ025 grain yield per plant
36 AQCQ041 1000-seed weight
37 AQEY012 1000-seed weight
38 AQEY018 1000-seed weight
39 AQGE011 grain width
40 AQGI230 total biomass yield
41 AQY003 plant height
42 CQAJ1 yield
43 CQAJ12 grain weight
44 CQAJ18 tiller number
45 CQAJ27 grain weight
46 CQAJ5 tiller number
47 CQAJ8 grain number
48 CQAL25 grain length
49 CQE51 space
50 CQE52 space to culm ratio
51 AQEM004 salt sensitivity
52 AQEM005 salt sensitivity
53 AQEM010 salt sensitivity
54 AQEM011 salt sensitivity
55 CQAD5 allelopathic effect
56 AQBL003 potassium sensitivity
57 CQAE4 days to heading
58 CQQ34 root weight
59 AQBC053 panicle tiller ratio
60 AQBC054 panicle tiller ratio
61 AQBX015 panicle weight
62 AQBX016 panicle weight
63 AQBX017 panicle weight
64 AQBX032 panicle weight
65 AQBX033 panicle weight
66 AQBX034 panicle weight
67 DQE40 relative growth rate
68 CQE53 specific leaf area
69 CQE54 plant height
70 CQE55 plant height

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000166 5-10 days post-anthesis stage (+)
2 MCP:1000169 inflorescence 0.5-2mm stage (+)
3 MCP:1000170 inflorescence 2.1-5mm stage (+)
4 MCP:1000171 inflorescence 5.1-10mm stage (+)
5 MCP:1000172 inflorescence 0-3cm stage (+)
6 MCP:1000173 inflorescence 5-10cm stage (+)
7 MCP:1000174 inflorescence 10-15cm stage (+)
8 MCP:1000175 inflorescence 15-22cm stage (+)
9 MCP:1000176 inflorescence 22-30cm stage (+)
10 MCP:1000177 0-2 days post-anthesis stage (+)
11 MCP:1000180 11-20 days post-anthesis stage (+)
12 MCP:1000181 21-29 days post-anthesis stage (+)
13 MCP:1000212 3-4 days post-anthesis stage (+)
14 MCP:1000518 seedling development stage (+)
15 MCP:1000520 young inflorescence stage (+)
16 PO:0007014 booting (+)
17 PO:0007016 4 flowering (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0005004 shoot node (+)
2 PO:0006339 juvenile leaf (+)
3 PO:0006340 adult leaf (+)
4 PO:0008037 seedling (+)
5 PO:0009005 root (+)
6 PO:0009006 shoot system (+)
7 PO:0009010 seed (+)
8 PO:0009047 stem (+)
9 PO:0009049 inflorescence (+)
10 PO:0020039 leaf lamina (+)
11 PO:0020104 leaf sheath (+)
12 PO:0020148 shoot apical meristem (+)
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Ahmad F; Huang X; Lan H X; Huma T; Bao Y M; Huang J; Zhang H S; Comprehensive gene expression analysis of the DNA (cytosine-5) methyltransferase family in rice (Oryza sativa L.). Genetics and molecular research : GMR 2014:13
PMID [25061741]

Sharma Rita; Mohan Singh R K; Malik Garima; Deveshwar Priyanka; Tyagi Akhilesh K; Kapoor Sanjay; Kapoor Meenu; Rice cytosine DNA methyltransferases - gene expression profiling during reproductive development and abiotic stress. FEBS Journal 2009:276
PMID [19788421]

Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India