Rice gene details
Searching for LOC_Os07g08840 [thioredoxin, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os07g08840.1 123 8 112 PF00085.12 Thioredoxin
2 LOC_Os07g08840.2 109 8 71 PF00085.12 Thioredoxin
3 LOC_Os07g08840.3 88 8 71 PF00085.12 Thioredoxin
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -1
N22InfloresenceFC
  4
N22 Root FC
  2
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
  2
IR64 Root FC
  -1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003824 catalytic activity (RGAP)
2 GO:0030234 enzyme regulator activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009409 response to cold  
2 GO:0033673 negative regulation of kinase activity  
3 GO:0042326 negative regulation of phosphorylation  
4 GO:0008152 metabolic process (RGAP)
5 GO:0019725 cellular homeostasis (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005829 cytosol (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007069 gibberellic acid regimen (-)
2 EO:0007196 light regimen (-)
3 EO:0007204 1-naphthaleneacetic acid (-)
4 EO:0007290 kinetin regimen (-)
5 EO:0007338 cold water temperature regimen (+)
6 MCE:1000203 dark regimen (-)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQGD029 pericarp color
2 AQGD030 pericarp color
3 AQGD028 pericarp color
4 CQE48 plant height
5 CQE49 plant height
6 CQE50 specific leaf area
7 CQN16 soluble protein content
8 CQN35 leaf senescence
9 CQN36 leaf senescence
10 AQED046 1000-seed weight
11 AQEE024 colored grain percentage
12 AQEE026 colored grain percentage
13 AQEE028 colored grain percentage
14 AQEE030 colored grain percentage
15 AQEE032 colored grain percentage
16 AQEE034 colored grain percentage
17 AQEE036 colored grain percentage
18 AQEE038 colored grain percentage
19 CQAS81 days to maturity
20 AQED003 days to heading
21 AQEE007 colored grain percentage
22 AQEE010 colored grain percentage
23 CQAW24 root number
24 CQAX8 plant height
25 CQAS91 yield
26 AQF068 anther length
27 CQAH33 seed dormancy
28 AQAC008 germination speed
29 AQAF031 blast disease resistance
30 AQAF032 blast disease resistance
31 AQAG048 1000-seed weight
32 AQCB013 filled grain number
33 AQCQ018 1000-seed weight
34 AQCQ025 grain yield per plant
35 AQCQ041 1000-seed weight
36 AQEY012 1000-seed weight
37 AQEY018 1000-seed weight
38 AQGE011 grain width
39 AQGI230 total biomass yield
40 AQY003 plant height
41 CQAJ1 yield
42 CQAJ12 grain weight
43 CQAJ18 tiller number
44 CQAJ27 grain weight
45 CQAJ5 tiller number
46 CQAJ8 grain number
47 CQAL25 grain length
48 CQE51 space
49 CQE52 space to culm ratio
50 AQBC053 panicle tiller ratio
51 AQBC054 panicle tiller ratio
52 AQBX015 panicle weight
53 AQBX016 panicle weight
54 AQBX017 panicle weight
55 AQBX032 panicle weight
56 AQBX033 panicle weight
57 AQBX034 panicle weight
58 DQE40 relative growth rate
59 CQE53 specific leaf area
60 CQE54 plant height
61 CQE55 plant height
62 AQDY107 panicle number
63 AQEM003 salt sensitivity
64 AQAX017 days to heading
65 AQAX018 days to heading
66 AQDY108 panicle length
67 AQDV005 biomass yield
68 AQEA094 plant height
69 AQEA095 plant height
70 AQEA096 plant height
71 AQEA097 plant height
72 AQEA098 plant height
73 AQEA249 days to heading
74 AQEA250 days to heading
75 AQEA251 days to heading
76 AQEA252 days to heading
77 AQEA253 days to heading
78 AQEA254 days to heading
79 AQEA255 days to heading
80 AQEA256 days to heading
81 AQEA257 days to heading
82 AQEA258 days to heading
83 AQEA259 days to heading
84 AQEA260 days to heading
85 AQEA261 days to heading

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000107 post-germination stage (-)
2 MCP:1000110 1 day pre-heading stage (-)
3 MCP:1000136 5 days pre-heading stage (-)
4 MCP:1000194 inflorescence 4-5cm stage (-)
5 MCP:1000201 14 days post-heading stage (-)
6 MCP:1000250 inflorescenece secondary branch primordium differentiation stage (-)
7 MCP:1000489 3 days post-anthesis stage (-)
8 MCP:1000518 seedling development stage (+)
9 PO:0007015 radicle emergence (-)
10 PO:0007022 imbibition (-)
11 PO:0007041 inflorescence emergence from flag leaf sheath (-)
12 PO:0007071 2.02 main shoot and axillary shoots visible at two nodes (-)
13 PO:0007106 LP.03 three leaves visible (-)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000001 embryo proper (-)
2 PO:0005052 plant callus (-)
3 PO:0006000 Poaceae hull (-)
4 PO:0009005 root (+)
5 PO:0009006 shoot system (+)
6 PO:0009010 seed (-)
7 PO:0009025 vascular leaf (-)
8 PO:0009029 stamen (-)
9 PO:0009047 stem (-)
10 PO:0009049 inflorescence (-)
11 PO:0009051 spikelet (-)
12 PO:0020031 radicle (-)
13 PO:0020032 plumule (-)
14 PO:0020103 flag leaf (-)
15 PO:0020104 leaf sheath (-)
16 PO:0025034 leaf (-)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Xie Guosheng; Kato Hideki; Sasaki Kentaro; Imai Ryozo; A cold-induced thioredoxin h of rice, OsTrx23, negatively regulates kinase activities of OsMPK3 and OsMPK6 in vitro. FEBS Letters 2009:583
PMID [19665023]


Nuruzzaman Mohammed; Gupta Madhur; Zhang Chengjun; Wang Lei; Xie Weibo; Xiong Lizhong; Zhang Qifa; Lian Xingming; Sequence and expression analysis of the thioredoxin protein gene family in rice. Molecular genetics and genomics 2008:280
PMID [18491141]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India