Rice gene details
Searching for LOC_Os07g10490 [zeta-carotene desaturase, chloroplast/chromoplast precursor, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os07g10490.1 579 82 547 PF01593.16 Amino_oxidase
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -1
N22InfloresenceFC
  1
N22 Root FC
  2
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  -1
IR64 Root FC
  1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003824 catalytic activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009416 response to light stimulus  
2 GO:0009058 biosynthetic process (RGAP)
3 GO:0009987 cellular process (RGAP)
4 GO:0006629 lipid metabolic process (RGAP)
5 GO:0008152 metabolic process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0009536 plastid (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007196 light regimen (+)
2 EO:0007270 continuous dark (no light) regimen (+)
3 EO:0007404 drought environment (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 CAROTENOID-PWY carotenoid biosynthesis

QTL details
S. No. QTL Id QTL Associated Trait
1 AQGD029 pericarp color
2 AQGD030 pericarp color
3 AQGD028 pericarp color
4 CQE48 plant height
5 CQE49 plant height
6 CQE50 specific leaf area
7 CQN16 soluble protein content
8 CQN35 leaf senescence
9 CQN36 leaf senescence
10 AQED046 1000-seed weight
11 AQEE024 colored grain percentage
12 AQEE026 colored grain percentage
13 AQEE028 colored grain percentage
14 AQEE030 colored grain percentage
15 AQEE032 colored grain percentage
16 AQEE034 colored grain percentage
17 AQEE036 colored grain percentage
18 AQEE038 colored grain percentage
19 CQAS81 days to maturity
20 AQED003 days to heading
21 AQEE007 colored grain percentage
22 AQEE010 colored grain percentage
23 CQAS91 yield
24 AQF068 anther length
25 CQAH33 seed dormancy
26 AQAC008 germination speed
27 AQAF031 blast disease resistance
28 AQAF032 blast disease resistance
29 AQAG048 1000-seed weight
30 AQCB013 filled grain number
31 AQCQ018 1000-seed weight
32 AQCQ025 grain yield per plant
33 AQCQ041 1000-seed weight
34 AQEY012 1000-seed weight
35 AQEY018 1000-seed weight
36 AQGE011 grain width
37 AQGI230 total biomass yield
38 AQY003 plant height
39 CQAJ1 yield
40 CQAJ12 grain weight
41 CQAJ18 tiller number
42 CQAJ27 grain weight
43 CQAJ5 tiller number
44 CQAJ8 grain number
45 CQAL25 grain length
46 CQE51 space
47 CQE52 space to culm ratio
48 AQBC053 panicle tiller ratio
49 AQBC054 panicle tiller ratio
50 AQBX015 panicle weight
51 AQBX016 panicle weight
52 AQBX017 panicle weight
53 AQBX032 panicle weight
54 AQBX033 panicle weight
55 AQBX034 panicle weight
56 DQE40 relative growth rate
57 CQE53 specific leaf area
58 CQE54 plant height
59 CQE55 plant height
60 AQDY107 panicle number
61 AQEM003 salt sensitivity
62 AQAX017 days to heading
63 AQAX018 days to heading
64 AQDY108 panicle length
65 AQDV005 biomass yield
66 AQEA094 plant height
67 AQEA095 plant height
68 AQEA096 plant height
69 AQEA097 plant height
70 AQEA098 plant height
71 AQEA249 days to heading
72 AQEA250 days to heading
73 AQEA251 days to heading
74 AQEA252 days to heading
75 AQEA253 days to heading
76 AQEA254 days to heading
77 AQEA255 days to heading
78 AQEA256 days to heading
79 AQEA257 days to heading
80 AQEA258 days to heading
81 AQEA259 days to heading
82 AQEA260 days to heading
83 AQEA261 days to heading

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0004506 developing seed stage (+)
2 PO:0007050 FR.03 late stage of fruit ripening (+)
3 PO:0007065 LP.05 five leaves visible (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000003 whole plant (+)
2 PO:0008037 seedling (+)
3 PO:0009005 root (+)
4 PO:0009006 shoot system (+)
5 PO:0009010 seed (+)
6 PO:0009025 vascular leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Du Hao; Chang Yu; Huang Fei; Xiong Lizhong; GID1 modulates stomatal response and submergence tolerance involving ABA and GA signaling in rice. Journal of integrative plant biology 2014:
PMID [25418692]


Du Hao; Wu Nai; Fu Jing; Wang Shiping; Li Xianghua; Xiao Jinghua; Xiong Lizhong; A GH3 family member, OsGH3-2, modulates auxin and abscisic acid levels and differentially affects drought and cold tolerance in rice. Journal of Experimental Botany 2012:
PMID [23112280]


Chaudhary Neetu; Nijhawan Aashima; Khurana Jitendra P; Khurana Paramjit; Carotenoid biosynthesis genes in rice: structural analysis, genome-wide expression profiling and phylogenetic analysis. Molecular Genetics and Genomics 2010:283
PMID [19890663]


Du Hao; Wang Nili; Cui Fei; Li Xianghua; Xiao Jinghua; Xiong Lizhong; Characterization of the beta-carotene hydroxylase gene DSM2 conferring drought and oxidative stress resistance by increasing xanthophylls and abscisic acid synthesis in rice. Plant Physiology 2010:154
PMID [20852032]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India