Rice gene details
Searching for LOC_Os07g12890 [metal cation transporter, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os07g12890.1 391 47 387 PF02535.14 Zip
2 LOC_Os07g12890.2 358 47 354 PF02535.14 Zip
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -1
N22InfloresenceFC
  -2
N22 Root FC
  -3
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
  -2
IR64 Root FC
  -1

Functional details
Molecular Function
Not found
1 GO:0005215 transporter activity (RGAP)
Biological process
Not found
1 GO:0006810 transport (RGAP)
2 GO:0009987 cellular process (RGAP)
Cellular component
Not found
1 GO:0005623 cell (RGAP)
2 GO:0016020 membrane (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 MCE:1000173 cadmium nutrient regimen (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQGD029 pericarp color
2 AQGD030 pericarp color
3 AQGD028 pericarp color
4 CQN16 soluble protein content
5 CQN35 leaf senescence
6 CQN36 leaf senescence
7 CQAS81 days to maturity
8 AQED003 days to heading
9 AQEE007 colored grain percentage
10 AQEE010 colored grain percentage
11 CQAS91 yield
12 AQF068 anther length
13 CQAH33 seed dormancy
14 CQE52 space to culm ratio
15 CQE53 specific leaf area
16 CQE54 plant height
17 CQE55 plant height
18 AQEM003 salt sensitivity
19 AQAX017 days to heading
20 AQAX018 days to heading
21 AQDY108 panicle length
22 AQGF001 seed dormancy
23 AQGF002 seed dormancy
24 AQGF003 seed dormancy
25 AQGF011 seed dormancy
26 AQGF012 seed dormancy
27 AQGF013 seed dormancy
28 CQAN12 days to heading
29 CQAN15 days to heading
30 CQAN3 sheath blight disease resistance
31 AQA024 root number
32 AQA026 root number
33 AQA047 leaf rolling
34 AQEE005 colored grain percentage
35 AQAW006 spikelet number
36 AQAW014 primary branch
37 AQAG006 grain yield
38 AQAG022 grain number
39 AQAG027 grain number
40 AQBZ003 days to heading
41 AQBZ006 days to heading
42 AQBZ007 days to heading
43 AQBZ008 plant height
44 AQBZ009 plant height
45 AQBZ013 plant height
46 AQCB007 spikelet number
47 AQCB033 spikelets per panicle length
48 AQCQ034 grain number
49 AQCY022 grain yield
50 AQCY029 filled grain number
51 AQEY021 1000-seed weight
52 AQGI129 biomass yield
53 AQGI204 total biomass yield
54 AQGI220 total biomass yield
55 AQHR020 tiller number
56 AQHR048 plant height
57 AQHR049 plant height
58 AQQ010 tiller number
59 AQQ013 tiller number
60 AQQ017 seed number
61 AQQ021 seed number
62 AQY009 plant height
63 AQY013 days to heading
64 AQY017 days to heading
65 CQAJ15 yield
66 CQAJ22 grain number
67 CQAL2 grain length
68 CQR11 flour color

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009005 root (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Sasaki Akimasa; Yamaji Naoki; Ma Jian Feng; Overexpression of OsHMA3 enhances Cd tolerance and expression of Zn transporter genes in rice. Journal of experimental botany 2014:65
PMID [25151617]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India