Rice gene details
Searching for LOC_Os07g12900 [cadmium/zinc-transporting ATPase, putative ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os07g12900.1 1005 197 416 PF00122.12 E1-E2_ATPase
2 LOC_Os07g12900.1 1005 420 649 PF00702.18 Hydrolase
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -1
N22InfloresenceFC
  -3
N22 Root FC
  2
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  -1
IR64 Root FC
  1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0005215 transporter activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0010043 response to zinc ion  
2 GO:0010045 response to nickel ion  
3 GO:0010288 response to lead ion  
4 GO:0046686 response to cadmium ion  
5 GO:0008150 biological_process (RGAP)
6 GO:0006810 transport (RGAP)
7 GO:0009987 cellular process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005886 plasma membrane (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007276 cobalt nutrient regimen (+)
2 MCE:1000172 nickel nutrient regimen (+)
3 MCE:1000173 cadmium nutrient regimen (+)
4 MCE:1000325 lead nutrient regimen (+)
5 MCE:1000327 zinc nutrient regimen (Zn67 isotope) (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQGD029 pericarp color
2 AQGD030 pericarp color
3 AQGD028 pericarp color
4 CQN16 soluble protein content
5 CQN35 leaf senescence
6 CQN36 leaf senescence
7 CQAS81 days to maturity
8 AQED003 days to heading
9 AQEE007 colored grain percentage
10 AQEE010 colored grain percentage
11 CQAS91 yield
12 AQF068 anther length
13 CQAH33 seed dormancy
14 CQE52 space to culm ratio
15 CQE53 specific leaf area
16 CQE54 plant height
17 CQE55 plant height
18 AQEM003 salt sensitivity
19 AQAX017 days to heading
20 AQAX018 days to heading
21 AQDY108 panicle length
22 AQGF001 seed dormancy
23 AQGF002 seed dormancy
24 AQGF003 seed dormancy
25 AQGF011 seed dormancy
26 AQGF012 seed dormancy
27 AQGF013 seed dormancy
28 CQAN12 days to heading
29 CQAN15 days to heading
30 CQAN3 sheath blight disease resistance
31 AQA024 root number
32 AQA026 root number
33 AQA047 leaf rolling
34 AQEE005 colored grain percentage
35 AQAW006 spikelet number
36 AQAW014 primary branch
37 AQAG006 grain yield
38 AQAG022 grain number
39 AQAG027 grain number
40 AQBZ003 days to heading
41 AQBZ006 days to heading
42 AQBZ007 days to heading
43 AQBZ008 plant height
44 AQBZ009 plant height
45 AQBZ013 plant height
46 AQCB007 spikelet number
47 AQCB033 spikelets per panicle length
48 AQCQ034 grain number
49 AQCY022 grain yield
50 AQCY029 filled grain number
51 AQEY021 1000-seed weight
52 AQGI129 biomass yield
53 AQGI204 total biomass yield
54 AQGI220 total biomass yield
55 AQHR020 tiller number
56 AQHR048 plant height
57 AQHR049 plant height
58 AQQ010 tiller number
59 AQQ013 tiller number
60 AQQ017 seed number
61 AQQ021 seed number
62 AQY009 plant height
63 AQY013 days to heading
64 AQY017 days to heading
65 CQAJ15 yield
66 CQAJ22 grain number
67 CQAL2 grain length
68 CQR11 flour color

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000557 root cell sap (+)
2 PO:0008037 seedling (+)
3 PO:0009005 root (+)
4 PO:0009006 shoot system (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000577 lead content (+)
2 TO:0000078 root dry weight (+)
3 TO:0000552 shoot dry weight (+)
4 TO:0006048 manganese concentration (+)
5 TO:0006050 cobalt concentration (+)
6 TO:0006051 nickel concenteration (+)
7 TO:0006053 zinc concentration (+)
8 TO:0006059 cadmium concentration (+)
9 TO:0006060 leaf chlorosis (+)
10 TO:0020089 iron content (+)
11 TO:0020090 zinc content (+)
12 TO:0020092 copper content (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Sasaki Akimasa; Yamaji Naoki; Ma Jian Feng; Overexpression of OsHMA3 enhances Cd tolerance and expression of Zn transporter genes in rice. Journal of experimental botany 2014:65
PMID [25151617]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India