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Searching for LOC_Os07g12900
[cadmium/zinc-transporting ATPase, putative ] |
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Basic information [Pfam DB] |
Graphical representation of the protein domains |
S. No. |
Locus Id |
Protein Length |
Doman Start |
Domain End |
Pfam ID |
Domain Name |
1 |
LOC_Os07g12900.1 |
1005 |
197 |
416 |
PF00122.12 |
E1-E2_ATPase |
2 |
LOC_Os07g12900.1 |
1005 |
420 |
649 |
PF00702.18 |
Hydrolase |
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The basic information is from RGAP and Pfam/InterPro databases |
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Gene model (download) 
IR64 N22
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Gene Expression
(RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC |
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N22InfloresenceFC |
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N22 Root FC |
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IR64 Flag-leaf FC |
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IR64InfloresenceFC |
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IR64 Root FC |
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Functional details
Molecular Function
S. No. |
GO Id |
GO Description |
1 |
GO:0005215 |
transporter activity |
(RGAP) |
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Biological process
Cellular component
S. No. |
GO Id |
GO Description |
1 |
GO:0005886 |
plasma membrane |
(RGAP) |
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Environment details
S. No. |
EO Id |
EO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
EO:0007276 |
cobalt nutrient regimen |
(+) |
2 |
MCE:1000172 |
nickel nutrient regimen |
(+) |
3 |
MCE:1000173 |
cadmium nutrient regimen |
(+) |
4 |
MCE:1000325 |
lead nutrient regimen |
(+) |
5 |
MCE:1000327 |
zinc nutrient regimen (Zn67 isotope) |
(+) |
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Metabolic Pathway details
QTL details
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Plant developmental stage / tissue details
Plant development stage
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
MCP:1000518 |
seedling development stage |
(+) |
Plant tissue/organ
Others
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
Not found |
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Trait details
Physical interaction details
Interaction type: protein-protein
Interaction type: protein-DNA
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Related publications [Sorted by year] |
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1 |
Sasaki Akimasa; Yamaji Naoki; Ma Jian Feng; Overexpression of OsHMA3 enhances Cd tolerance and expression of Zn transporter genes in rice. Journal of experimental botany 2014:65
PMID [25151617]
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