Rice gene details
Searching for LOC_Os07g18154 [aldehyde oxidase 4, putative, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os07g18154.1 845 20 92 PF00111.19 Fer2
2 LOC_Os07g18154.1 845 101 188 PF01799.12 Fer2_2
3 LOC_Os07g18154.1 845 250 432 PF00941.13 FAD_binding_5
4 LOC_Os07g18154.1 845 445 558 PF03450.9 CO_deh_flav_C
5 LOC_Os07g18154.1 845 610 717 PF01315.14 Ald_Xan_dh_C
6 LOC_Os07g18154.1 845 732 842 PF02738.10 Ald_Xan_dh_C2
7 LOC_Os07g18154.2 727 4 70 PF01799.12 Fer2_2
8 LOC_Os07g18154.2 727 132 314 PF00941.13 FAD_binding_5
9 LOC_Os07g18154.2 727 327 440 PF03450.9 CO_deh_flav_C
10 LOC_Os07g18154.2 727 492 599 PF01315.14 Ald_Xan_dh_C
11 LOC_Os07g18154.2 727 614 724 PF02738.10 Ald_Xan_dh_C2
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -1
N22InfloresenceFC
  -4
N22 Root FC
  2
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  2
IR64 Root FC
  -2

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003824 catalytic activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0010212 response to ionizing radiation  
2 GO:0008152 metabolic process (RGAP)
3 GO:0009058 biosynthetic process (RGAP)
4 GO:0009987 cellular process (RGAP)
Cellular component
S. No. GO Id GO Description

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 MCE:1000310 nitrogen ion irradiation (+)
2 MCE:1000326 vacuum treatment (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQGD029 pericarp color
2 AQGD030 pericarp color
3 AQGD028 pericarp color
4 CQN16 soluble protein content
5 CQN35 leaf senescence
6 CQN36 leaf senescence
7 CQAS81 days to maturity
8 AQED003 days to heading
9 AQEE007 colored grain percentage
10 AQEE010 colored grain percentage
11 CQAS91 yield
12 AQF068 anther length
13 CQAH33 seed dormancy
14 AQAX017 days to heading
15 AQAX018 days to heading
16 AQDY108 panicle length
17 AQGF001 seed dormancy
18 AQGF002 seed dormancy
19 AQGF003 seed dormancy
20 AQGF011 seed dormancy
21 AQGF012 seed dormancy
22 AQGF013 seed dormancy
23 CQAN12 days to heading
24 CQAN15 days to heading
25 CQAN3 sheath blight disease resistance
26 AQA024 root number
27 AQA026 root number
28 AQA047 leaf rolling
29 AQEE005 colored grain percentage
30 AQAW006 spikelet number
31 AQAW014 primary branch
32 AQAG006 grain yield
33 AQAG022 grain number
34 AQAG027 grain number
35 AQBZ003 days to heading
36 AQBZ006 days to heading
37 AQBZ007 days to heading
38 AQBZ008 plant height
39 AQBZ009 plant height
40 AQBZ013 plant height
41 AQCB007 spikelet number
42 AQCB033 spikelets per panicle length
43 AQCQ034 grain number
44 AQCY022 grain yield
45 AQCY029 filled grain number
46 AQEY021 1000-seed weight
47 AQGI129 biomass yield
48 AQGI204 total biomass yield
49 AQGI220 total biomass yield
50 AQHR020 tiller number
51 AQHR048 plant height
52 AQHR049 plant height
53 AQQ010 tiller number
54 AQQ013 tiller number
55 AQQ017 seed number
56 AQQ021 seed number
57 AQY009 plant height
58 AQY013 days to heading
59 AQY017 days to heading
60 CQAJ15 yield
61 CQAJ22 grain number
62 CQAL2 grain length
63 CQR11 flour color
64 AQM001 days to heading
65 CQE56 seed dormancy

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0008037 seedling (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Chen Q F; Ya H Y; Feng Y R; Jiao Z; Expression of the key genes involved in ABA biosynthesis in rice implanted by ion beam. Applied biochemistry and biotechnology 2014:173
PMID [24634194]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India