Rice gene details
Searching for LOC_Os07g25540 [flavin monooxygenase, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os07g25540.1 399 12 391 PF07992.6 Pyr_redox_2
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
N22 Root FC
IR64 Flag-leaf FC
IR64 Root FC

Functional details
Molecular Function
Not found
1 GO:0003824 catalytic activity (RGAP)
Biological process
Not found
1 GO:0008152 metabolic process (RGAP)
2 GO:0009058 biosynthetic process (RGAP)
3 GO:0009987 cellular process (RGAP)
Cellular component
Not found
1 GO:0005575 cellular_component (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 MCE:1000103 fluridone (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 PWY1F-823 leucopelargonidin and leucocyanidin biosynthesis

QTL details
S. No. QTL Id QTL Associated Trait
1 AQGD029 pericarp color
2 AQGD030 pericarp color
3 AQGD028 pericarp color
4 CQN16 soluble protein content
5 CQN35 leaf senescence
6 CQN36 leaf senescence
7 AQED003 days to heading
8 AQEE007 colored grain percentage
9 AQEE010 colored grain percentage
10 CQAS91 yield
11 AQF068 anther length
12 CQAH33 seed dormancy
13 AQDY108 panicle length
14 AQA024 root number
15 AQA026 root number
16 AQA047 leaf rolling
17 AQEE005 colored grain percentage
18 AQAW006 spikelet number
19 AQAW014 primary branch
20 AQAG006 grain yield
21 AQAG022 grain number
22 AQAG027 grain number
23 AQBZ003 days to heading
24 AQBZ006 days to heading
25 AQBZ007 days to heading
26 AQBZ008 plant height
27 AQBZ009 plant height
28 AQBZ013 plant height
29 AQCB007 spikelet number
30 AQCB033 spikelets per panicle length
31 AQCQ034 grain number
32 AQCY022 grain yield
33 AQCY029 filled grain number
34 AQEY021 1000-seed weight
35 AQGI129 biomass yield
36 AQGI204 total biomass yield
37 AQGI220 total biomass yield
38 AQHR020 tiller number
39 AQHR048 plant height
40 AQHR049 plant height
41 AQQ010 tiller number
42 AQQ013 tiller number
43 AQQ017 seed number
44 AQQ021 seed number
45 AQY009 plant height
46 AQY013 days to heading
47 AQY017 days to heading
48 CQAJ15 yield
49 CQAJ22 grain number
50 CQAL2 grain length
51 CQR11 flour color
52 CQE56 seed dormancy
53 AQFR002 seedling vigor
54 AQFR005 seedling vigor
55 AQE093 tiller number
56 AQFE016 days to heading
57 AQFE017 days to heading
58 AQFE018 days to heading
59 AQFE019 days to heading
60 AQFE020 days to heading
61 AQCU151 panicle length
62 AQDR102 grain yield per panicle
63 AQDS075 spikelet sterility
64 CQAS82 panicle length
65 AQEN007 blast disease resistance
66 CQAV3 osmotic adjustment capacity
67 CQAW23 root number
68 CQAX7 plant height

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0007098 LP.02 two leaves visible (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000003 whole plant (+)
2 PO:0025034 leaf (+)
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Du Hao; Wu Nai; Chang Yu; Li Xianghua; Xiao Jinghua; Xiong Lizhong; Carotenoid deficiency impairs ABA and IAA biosynthesis and differentially affects drought and cold tolerance in rice. Plant molecular biology 2013:83
PMID [23846670]

Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India