Rice gene details
Searching for LOC_Os07g27670 [WRKY DNA-binding domain containing protein, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os07g27670.1 261 85 145 PF03106.7 WRKY
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -2
N22InfloresenceFC
  -1
N22 Root FC
  2
IR64 Flag-leaf FC
  4
IR64InfloresenceFC
  -1
IR64 Root FC
  8

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003700 sequence-specific DNA binding transcription factor activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009414 response to water deprivation  
2 GO:0009058 biosynthetic process (RGAP)
3 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005634 nucleus (RGAP)
2 GO:0005737 cytoplasm (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 MCE:1000116 mild drought (+)
2 MCE:1000117 severe drought (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQGD029 pericarp color
2 AQGD030 pericarp color
3 AQGD028 pericarp color
4 CQN16 soluble protein content
5 CQN35 leaf senescence
6 CQN36 leaf senescence
7 AQED003 days to heading
8 AQEE007 colored grain percentage
9 AQEE010 colored grain percentage
10 AQF068 anther length
11 CQAH33 seed dormancy
12 AQA024 root number
13 AQA026 root number
14 AQA047 leaf rolling
15 AQEE005 colored grain percentage
16 AQAG006 grain yield
17 AQAG022 grain number
18 AQAG027 grain number
19 AQBZ003 days to heading
20 AQBZ006 days to heading
21 AQBZ007 days to heading
22 AQBZ008 plant height
23 AQBZ009 plant height
24 AQBZ013 plant height
25 AQCB007 spikelet number
26 AQCB033 spikelets per panicle length
27 AQCQ034 grain number
28 AQCY022 grain yield
29 AQCY029 filled grain number
30 AQEY021 1000-seed weight
31 AQGI129 biomass yield
32 AQGI204 total biomass yield
33 AQGI220 total biomass yield
34 AQHR020 tiller number
35 AQHR048 plant height
36 AQHR049 plant height
37 AQQ010 tiller number
38 AQQ013 tiller number
39 AQQ017 seed number
40 AQQ021 seed number
41 AQY009 plant height
42 AQY013 days to heading
43 AQY017 days to heading
44 CQAJ15 yield
45 CQAJ22 grain number
46 CQAL2 grain length
47 CQR11 flour color
48 CQE56 seed dormancy
49 AQFR002 seedling vigor
50 AQFR005 seedling vigor
51 AQE093 tiller number
52 AQFE016 days to heading
53 AQFE017 days to heading
54 AQFE018 days to heading
55 AQFE019 days to heading
56 AQFE020 days to heading
57 AQCU151 panicle length
58 AQDR102 grain yield per panicle
59 AQDS075 spikelet sterility
60 CQAS82 panicle length
61 AQEN007 blast disease resistance
62 CQAV3 osmotic adjustment capacity
63 CQAW23 root number
64 CQAX7 plant height
65 AQCK003 seed dormancy

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000521 mature plant stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009049 inflorescence (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Nuruzzaman Mohammed; Sharoni Akhter Most; Satoh Kouji; Kumar Arvind; Leung Hei; Kikuchi Shoshi; Comparative transcriptome profiles of the WRKY gene family under control, hormone-treated, and drought conditions in near-isogenic rice lines reveal differential, tissue specific gene activation. Journal of plant physiology 2014:171
PMID [24189206]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India