Rice gene details
Searching for LOC_Os07g27790 [glutamate--cysteine ligase, chloroplast precursor, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os07g27790.1 497 116 407 PF04107.5 GCS2
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -1
N22InfloresenceFC
  -1
N22 Root FC
  5
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  1
IR64 Root FC
  -1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003824 catalytic activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0010269 response to selenium ion  
2 GO:0046685 response to arsenic-containing substance  
3 GO:0009058 biosynthetic process (RGAP)
4 GO:0009987 cellular process (RGAP)
5 GO:0019748 secondary metabolic process (RGAP)
6 GO:0006950 response to stress (RGAP)
7 GO:0009607 response to biotic stimulus (RGAP)
8 GO:0008150 biological_process (RGAP)
9 GO:0005975 carbohydrate metabolic process (RGAP)
10 GO:0009719 response to endogenous stimulus (RGAP)
11 GO:0009628 response to abiotic stimulus (RGAP)
12 GO:0009908 flower development (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0009536 plastid (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 MCE:1000345 sodium arsenite (Na2HAsO2) (+)
2 MCE:1000346 sodium selenite (Na2O3Se) (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 PWY-4361 methionine salvage pathway

QTL details
S. No. QTL Id QTL Associated Trait
1 AQGD029 pericarp color
2 AQGD030 pericarp color
3 AQGD028 pericarp color
4 CQN16 soluble protein content
5 CQN35 leaf senescence
6 CQN36 leaf senescence
7 AQED003 days to heading
8 AQEE007 colored grain percentage
9 AQEE010 colored grain percentage
10 AQF068 anther length
11 CQAH33 seed dormancy
12 AQA024 root number
13 AQA026 root number
14 AQA047 leaf rolling
15 AQEE005 colored grain percentage
16 AQAG006 grain yield
17 AQAG022 grain number
18 AQAG027 grain number
19 AQBZ003 days to heading
20 AQBZ006 days to heading
21 AQBZ007 days to heading
22 AQBZ008 plant height
23 AQBZ009 plant height
24 AQBZ013 plant height
25 AQCB007 spikelet number
26 AQCB033 spikelets per panicle length
27 AQCQ034 grain number
28 AQCY022 grain yield
29 AQCY029 filled grain number
30 AQEY021 1000-seed weight
31 AQGI129 biomass yield
32 AQGI204 total biomass yield
33 AQGI220 total biomass yield
34 AQHR020 tiller number
35 AQHR048 plant height
36 AQHR049 plant height
37 AQQ010 tiller number
38 AQQ013 tiller number
39 AQQ017 seed number
40 AQQ021 seed number
41 AQY009 plant height
42 AQY013 days to heading
43 AQY017 days to heading
44 CQAJ15 yield
45 CQAJ22 grain number
46 CQAL2 grain length
47 CQR11 flour color
48 CQE56 seed dormancy
49 AQFR002 seedling vigor
50 AQFR005 seedling vigor
51 AQE093 tiller number
52 AQFE016 days to heading
53 AQFE017 days to heading
54 AQFE018 days to heading
55 AQFE019 days to heading
56 AQFE020 days to heading
57 AQCU151 panicle length
58 AQDR102 grain yield per panicle
59 AQDS075 spikelet sterility
60 CQAS82 panicle length
61 AQEN007 blast disease resistance
62 CQAV3 osmotic adjustment capacity
63 CQAW23 root number
64 CQAX7 plant height
65 AQCK003 seed dormancy

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009005 root (+)
2 PO:0009006 shoot system (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000648 gamma-glutamylcysteine synthetase activity (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Kumar Amit; Singh Rana Pratap; Singh Pradyumna Kumar; Awasthi Surabhi; Chakrabarty Debasis; Trivedi Prabodh Kumar; Tripathi Rudra Deo; Selenium ameliorates arsenic induced oxidative stress through modulation of antioxidant enzymes and thiols in rice (Oryza sativa L.). Ecotoxicology (London, England) 2014:23
PMID [24985886]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India