Rice gene details
Searching for LOC_Os07g30774 [calmodulin-binding transcription activator 5, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os07g30774.1 928 29 147 PF03859.8 CG-1
2 LOC_Os07g30774.1 928 609 641 PF00023.22 Ank
3 LOC_Os07g30774.1 928 777 797 PF00612.19 IQ
4 LOC_Os07g30774.1 928 800 820 PF00612.19 IQ
5 LOC_Os07g30774.1 928 883 903 PF00612.19 IQ
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  1
N22 Root FC
  4
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  1
IR64 Root FC
  -1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0005515 protein binding (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0002238 response to molecule of fungal origin  
2 GO:0009617 response to bacterium  
3 GO:0009620 response to fungus  
4 GO:0042742 defense response to bacterium  
5 GO:0050832 defense response to fungus  
6 GO:0009058 biosynthetic process (RGAP)
7 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005634 nucleus (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007198 water environment (+)
2 EO:0007257 Xanthomonas oryzae pv. oryzae (+)
3 EO:0007402 fungal elicitor (+)
4 MCE:1000266 Magnaporthe grisea race KJ 401 (+)
5 MCE:1000297 Xanthomonas oryzae pv. oryzae race K1 (strain DY89031) (+)
6 MCE:1000304 Magnaporthe grisea race KI313 (+)
7 MCE:1000305 Xanthomonas oryzae pv. oryzae race K2 (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQGD029 pericarp color
2 AQGD030 pericarp color
3 AQGD028 pericarp color
4 CQN35 leaf senescence
5 CQN36 leaf senescence
6 AQA024 root number
7 AQA026 root number
8 AQA047 leaf rolling
9 AQEE005 colored grain percentage
10 CQE56 seed dormancy
11 AQFR002 seedling vigor
12 AQFR005 seedling vigor
13 AQE093 tiller number
14 AQFE016 days to heading
15 AQFE017 days to heading
16 AQFE018 days to heading
17 AQFE019 days to heading
18 AQFE020 days to heading
19 AQCU151 panicle length
20 AQDR102 grain yield per panicle
21 AQDS075 spikelet sterility
22 CQAS82 panicle length
23 AQEN007 blast disease resistance
24 CQAV3 osmotic adjustment capacity
25 CQAW23 root number
26 CQAX7 plant height
27 AQCK003 seed dormancy
28 CQG5 abaxial stomatal frequency
29 CQN17 soluble protein content
30 CQN47 panicle weight
31 AQAQ006 blast disease resistance
32 AQAQ016 blast disease resistance
33 CQB25 plant height
34 AQFV032 seedling vigor
35 AQO031 root dry weight
36 AQBM002 callus induction
37 AQAP057 brown planthopper resistance
38 AQFW085 plant height
39 AQFW104 panicle length
40 AQCU241 spikelet number
41 AQFW127 spikelet fertility
42 AQAL036 biomass yield
43 AQAL056 deep root dry weight
44 AQDZ009 culm thickness
45 CQE57 panicle number

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 PO:0007123 LP.06 six leaves visible (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000003 whole plant (+)
2 PO:0000005 cultured plant cell (+)
3 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000061 lesion length (+)
2 MCT:1000478 necrotic lesion spots (+)
3 MCT:1000534 callose accumulation (+)
4 MCT:1000555 lesion diameter (+)
5 MCT:1000556 presence of fungal hyphae (+)
6 MCT:2000001 bacterial colony forming units (+)
7 TO:0000085 leaf rolling (+)
8 TO:0000207 plant height (+)
9 TO:0000446 leaf drying (+)
10 TO:0006060 leaf chlorosis (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Koo Sung Cheol; Choi Man Soo; Chun Hyun Jin; Shin Dong Bum; Park Bong Soo; Kim Yul Ho; Park Hyang-Mi; Seo Hak Soo; Song Jong Tae; Kang Kyu Young; Yun Dae-Jin; Chung Woo Sik; Cho Moo Je; Kim Min Chul; The calmodulin-binding transcription factor OsCBT suppresses defense responses to pathogens in rice. Molecules and cells 2009:27
PMID [19466605]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India