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Searching for LOC_Os07g30774
[calmodulin-binding transcription activator 5, putative, expressed ] |
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Basic information [Pfam DB] |
Graphical representation of the protein domains |
S. No. |
Locus Id |
Protein Length |
Doman Start |
Domain End |
Pfam ID |
Domain Name |
1 |
LOC_Os07g30774.1 |
928 |
29 |
147 |
PF03859.8 |
CG-1 |
2 |
LOC_Os07g30774.1 |
928 |
609 |
641 |
PF00023.22 |
Ank |
3 |
LOC_Os07g30774.1 |
928 |
777 |
797 |
PF00612.19 |
IQ |
4 |
LOC_Os07g30774.1 |
928 |
800 |
820 |
PF00612.19 |
IQ |
5 |
LOC_Os07g30774.1 |
928 |
883 |
903 |
PF00612.19 |
IQ |
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The basic information is from RGAP and Pfam/InterPro databases |
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Gene model (download) 
IR64 N22
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Gene Expression
(RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC |
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N22InfloresenceFC |
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N22 Root FC |
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IR64 Flag-leaf FC |
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IR64InfloresenceFC |
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IR64 Root FC |
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Functional details
Molecular Function
S. No. |
GO Id |
GO Description |
1 |
GO:0005515 |
protein binding |
(RGAP) |
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Biological process
S. No. |
GO Id |
GO Description |
1 |
GO:0002238 |
response to molecule of fungal origin |
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2 |
GO:0009617 |
response to bacterium |
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3 |
GO:0009620 |
response to fungus |
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4 |
GO:0042742 |
defense response to bacterium |
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5 |
GO:0050832 |
defense response to fungus |
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6 |
GO:0009058 |
biosynthetic process |
(RGAP) |
7 |
GO:0006139 |
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process |
(RGAP) |
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Cellular component
S. No. |
GO Id |
GO Description |
1 |
GO:0005634 |
nucleus |
(RGAP) |
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Environment details
S. No. |
EO Id |
EO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
EO:0007198 |
water environment |
(+) |
2 |
EO:0007257 |
Xanthomonas oryzae pv. oryzae |
(+) |
3 |
EO:0007402 |
fungal elicitor |
(+) |
4 |
MCE:1000266 |
Magnaporthe grisea race KJ 401 |
(+) |
5 |
MCE:1000297 |
Xanthomonas oryzae pv. oryzae race K1 (strain DY89031) |
(+) |
6 |
MCE:1000304 |
Magnaporthe grisea race KI313 |
(+) |
7 |
MCE:1000305 |
Xanthomonas oryzae pv. oryzae race K2 |
(+) |
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Metabolic Pathway details
QTL details
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Plant developmental stage / tissue details
Plant development stage
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
MCP:1000518 |
seedling development stage |
(+) |
2 |
PO:0007123 |
LP.06 six leaves visible |
(+) |
Plant tissue/organ
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
PO:0000003 |
whole plant |
(+) |
2 |
PO:0000005 |
cultured plant cell |
(+) |
3 |
PO:0025034 |
leaf |
(+) |
Others
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
Not found |
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Trait details
Physical interaction details
Interaction type: protein-protein
Interaction type: protein-DNA
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Related publications [Sorted by year] |
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1 |
Koo Sung Cheol; Choi Man Soo; Chun Hyun Jin; Shin Dong Bum; Park Bong Soo; Kim Yul Ho; Park Hyang-Mi; Seo Hak Soo; Song Jong Tae; Kang Kyu Young; Yun Dae-Jin; Chung Woo Sik; Cho Moo Je; Kim Min Chul; The calmodulin-binding transcription factor OsCBT suppresses defense responses to pathogens in rice. Molecules and cells 2009:27
PMID [19466605]
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