Rice gene details
Searching for LOC_Os07g33110 [CAMK_CAMK_like.33 - CAMK includes calcium/calmodulin depedent protein kinases, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os07g33110.1 534 85 343 PF00069.17 Pkinase
2 LOC_Os07g33110.1 534 389 417 PF00036.24 efhand
3 LOC_Os07g33110.1 534 425 453 PF00036.24 efhand
4 LOC_Os07g33110.1 534 461 489 PF00036.24 efhand
5 LOC_Os07g33110.1 534 496 524 PF00036.24 efhand
6 LOC_Os07g33110.2 534 85 343 PF00069.17 Pkinase
7 LOC_Os07g33110.2 534 389 417 PF00036.24 efhand
8 LOC_Os07g33110.2 534 425 453 PF00036.24 efhand
9 LOC_Os07g33110.2 534 461 489 PF00036.24 efhand
10 LOC_Os07g33110.2 534 496 524 PF00036.24 efhand
11 LOC_Os07g33110.3 534 85 343 PF00069.17 Pkinase
12 LOC_Os07g33110.3 534 389 417 PF00036.24 efhand
13 LOC_Os07g33110.3 534 425 453 PF00036.24 efhand
14 LOC_Os07g33110.3 534 461 489 PF00036.24 efhand
15 LOC_Os07g33110.3 534 496 524 PF00036.24 efhand
16 LOC_Os07g33110.4 534 85 343 PF00069.17 Pkinase
17 LOC_Os07g33110.4 534 389 417 PF00036.24 efhand
18 LOC_Os07g33110.4 534 425 453 PF00036.24 efhand
19 LOC_Os07g33110.4 534 461 489 PF00036.24 efhand
20 LOC_Os07g33110.4 534 496 524 PF00036.24 efhand
21 LOC_Os07g33110.5 385 85 343 PF00069.17 Pkinase
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -1
N22InfloresenceFC
  -1
N22 Root FC
  2
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  1
IR64 Root FC
  -2

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0000166 nucleotide binding (RGAP)
2 GO:0016301 kinase activity (RGAP)
3 GO:0005515 protein binding (RGAP)
4 GO:0005488 binding (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009725 response to hormone stimulus  
2 GO:0009733 response to auxin stimulus  
3 GO:0009739 response to gibberellin stimulus  
4 GO:0009058 biosynthetic process (RGAP)
5 GO:0006464 protein modification process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005575 cellular_component (RGAP)
2 GO:0005886 plasma membrane (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007204 1-naphthaleneacetic acid (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQGD029 pericarp color
2 AQGD030 pericarp color
3 AQGD028 pericarp color
4 CQN35 leaf senescence
5 CQN36 leaf senescence
6 AQA024 root number
7 AQA026 root number
8 AQA047 leaf rolling
9 AQEE005 colored grain percentage
10 AQFE016 days to heading
11 AQFE017 days to heading
12 AQFE018 days to heading
13 AQFE019 days to heading
14 AQFE020 days to heading
15 CQAS82 panicle length
16 AQEN007 blast disease resistance
17 CQAV3 osmotic adjustment capacity
18 CQAW23 root number
19 CQAX7 plant height
20 CQG5 abaxial stomatal frequency
21 CQN17 soluble protein content
22 CQN47 panicle weight
23 AQO031 root dry weight
24 AQBM002 callus induction
25 AQAP057 brown planthopper resistance
26 AQFW085 plant height
27 AQFW104 panicle length
28 AQAL036 biomass yield
29 AQAL056 deep root dry weight
30 AQDZ009 culm thickness
31 CQE57 panicle number
32 AQDI003 hybrid incompatibilty
33 AQDJ002 plant height
34 AQDK006 ratooning ability
35 CQB23 plant height
36 CQB24 seed set percent
37 AQGI207 total biomass yield
38 AQFP037 culm length
39 AQE031 grain yield per plant

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0007041 inflorescence emergence from flag leaf sheath (+)
2 PO:0007106 LP.03 three leaves visible (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0008037 seedling (+)
2 PO:0009005 root (+)
3 PO:0009047 stem (+)
4 PO:0009049 inflorescence (+)
5 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Ye Shuifeng; Wang Lei; Xie Weibo; Wan Bingliang; Li Xianghua; Lin Yongjun; Expression profile of calcium-dependent protein kinase (CDPKs) genes during the whole lifespan and under phytohormone treatment conditions in rice (Oryza sativa L. ssp. indica). Plant Molecular Biology 2009:70
PMID [19263224]


2  Gao Shumei; Zhang Haiwen; Tian Yun; Li Fang; Zhang Zhijin; Lu Xiangyang; Chen Xiaoliang; Huang Rongfeng; Expression of TERF1 in rice regulates expression of stress-responsive genes and enhances tolerance to drought and high-salinity. Plant cell reports 2008:27
PMID [18777179]


3  Wan Bingliang; Lin Yongjun; Mou Tongmin; Expression of rice Ca(2+)-dependent protein kinases (CDPKs) genes under different environmental stresses. FEBS Letters 2007:581
PMID [17336300]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India