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Searching for LOC_Os07g33110
[CAMK_CAMK_like.33 - CAMK includes calcium/calmodulin depedent protein kinases, expressed ] |
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Basic information [Pfam DB] |
Graphical representation of the protein domains |
S. No. |
Locus Id |
Protein Length |
Doman Start |
Domain End |
Pfam ID |
Domain Name |
1 |
LOC_Os07g33110.1 |
534 |
85 |
343 |
PF00069.17 |
Pkinase |
2 |
LOC_Os07g33110.1 |
534 |
389 |
417 |
PF00036.24 |
efhand |
3 |
LOC_Os07g33110.1 |
534 |
425 |
453 |
PF00036.24 |
efhand |
4 |
LOC_Os07g33110.1 |
534 |
461 |
489 |
PF00036.24 |
efhand |
5 |
LOC_Os07g33110.1 |
534 |
496 |
524 |
PF00036.24 |
efhand |
6 |
LOC_Os07g33110.2 |
534 |
85 |
343 |
PF00069.17 |
Pkinase |
7 |
LOC_Os07g33110.2 |
534 |
389 |
417 |
PF00036.24 |
efhand |
8 |
LOC_Os07g33110.2 |
534 |
425 |
453 |
PF00036.24 |
efhand |
9 |
LOC_Os07g33110.2 |
534 |
461 |
489 |
PF00036.24 |
efhand |
10 |
LOC_Os07g33110.2 |
534 |
496 |
524 |
PF00036.24 |
efhand |
11 |
LOC_Os07g33110.3 |
534 |
85 |
343 |
PF00069.17 |
Pkinase |
12 |
LOC_Os07g33110.3 |
534 |
389 |
417 |
PF00036.24 |
efhand |
13 |
LOC_Os07g33110.3 |
534 |
425 |
453 |
PF00036.24 |
efhand |
14 |
LOC_Os07g33110.3 |
534 |
461 |
489 |
PF00036.24 |
efhand |
15 |
LOC_Os07g33110.3 |
534 |
496 |
524 |
PF00036.24 |
efhand |
16 |
LOC_Os07g33110.4 |
534 |
85 |
343 |
PF00069.17 |
Pkinase |
17 |
LOC_Os07g33110.4 |
534 |
389 |
417 |
PF00036.24 |
efhand |
18 |
LOC_Os07g33110.4 |
534 |
425 |
453 |
PF00036.24 |
efhand |
19 |
LOC_Os07g33110.4 |
534 |
461 |
489 |
PF00036.24 |
efhand |
20 |
LOC_Os07g33110.4 |
534 |
496 |
524 |
PF00036.24 |
efhand |
21 |
LOC_Os07g33110.5 |
385 |
85 |
343 |
PF00069.17 |
Pkinase |
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The basic information is from RGAP and Pfam/InterPro databases |
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Gene model (download) 
IR64 N22
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Gene Expression
(RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC |
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N22InfloresenceFC |
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N22 Root FC |
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IR64 Flag-leaf FC |
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IR64InfloresenceFC |
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IR64 Root FC |
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Functional details
Molecular Function
Biological process
Cellular component
S. No. |
GO Id |
GO Description |
1 |
GO:0005575 |
cellular_component |
(RGAP) |
2 |
GO:0005886 |
plasma membrane |
(RGAP) |
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Environment details
S. No. |
EO Id |
EO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
EO:0007204 |
1-naphthaleneacetic acid |
(+) |
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Metabolic Pathway details
QTL details
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Plant developmental stage / tissue details
Plant development stage
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
PO:0007041 |
inflorescence emergence from flag leaf sheath |
(+) |
2 |
PO:0007106 |
LP.03 three leaves visible |
(+) |
Plant tissue/organ
Others
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
Not found |
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Trait details
Physical interaction details
Interaction type: protein-protein
Interaction type: protein-DNA
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Related publications [Sorted by year] |
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1 |
Ye Shuifeng; Wang Lei; Xie Weibo; Wan Bingliang; Li Xianghua; Lin Yongjun; Expression profile of calcium-dependent protein kinase (CDPKs) genes during the whole lifespan and under phytohormone treatment conditions in rice (Oryza sativa L. ssp. indica). Plant Molecular Biology 2009:70
PMID [19263224]
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2 |
Gao Shumei; Zhang Haiwen; Tian Yun; Li Fang; Zhang Zhijin; Lu Xiangyang; Chen Xiaoliang; Huang Rongfeng; Expression of TERF1 in rice regulates expression of stress-responsive genes and enhances tolerance to drought and high-salinity. Plant cell reports 2008:27
PMID [18777179]
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3 |
Wan Bingliang; Lin Yongjun; Mou Tongmin; Expression of rice Ca(2+)-dependent protein kinases (CDPKs) genes under different environmental stresses. FEBS Letters 2007:581
PMID [17336300]
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