Rice gene details
Searching for LOC_Os07g34520 [isocitrate lyase, putative, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os07g34520.1 573 21 551 PF00463.13 ICL
2 LOC_Os07g34520.2 562 10 540 PF00463.13 ICL
3 LOC_Os07g34520.3 550 21 545 PF00463.13 ICL
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  8
N22InfloresenceFC
  1
N22 Root FC
 
IR64 Flag-leaf FC
  -5
IR64InfloresenceFC
 
IR64 Root FC
  3

Functional details
Molecular Function
Not found
1 GO:0005515 protein binding (RGAP)
2 GO:0003824 catalytic activity (RGAP)
Biological process
Not found
1 GO:0008152 metabolic process (RGAP)
2 GO:0009987 cellular process (RGAP)
Cellular component
Not found
1 GO:0005575 cellular_component (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007187 salicylic acid regimen (+)
3 EO:0007270 continuous dark (no light) regimen (+)
4 EO:0007332 cold air temperature regimen (+)
5 EO:0007404 drought environment (+)
6 EO:0007407 methyl jasmonate (+)
7 MCE:1000069 dessication/dehydration stress (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 P105-PWY TCA cycle variation I

QTL details
S. No. QTL Id QTL Associated Trait
1 AQGD029 pericarp color
2 AQGD030 pericarp color
3 AQGD028 pericarp color
4 CQN35 leaf senescence
5 CQN36 leaf senescence
6 AQA024 root number
7 AQA026 root number
8 AQA047 leaf rolling
9 AQEE005 colored grain percentage
10 AQFE016 days to heading
11 AQFE017 days to heading
12 AQFE018 days to heading
13 AQFE019 days to heading
14 AQFE020 days to heading
15 CQAS82 panicle length
16 AQEN007 blast disease resistance
17 CQAV3 osmotic adjustment capacity
18 CQAW23 root number
19 CQAX7 plant height
20 CQN17 soluble protein content
21 CQN47 panicle weight
22 AQBM002 callus induction
23 AQAP057 brown planthopper resistance
24 AQFW085 plant height
25 AQFW104 panicle length
26 AQAL036 biomass yield
27 AQAL056 deep root dry weight
28 AQDZ009 culm thickness
29 CQE57 panicle number
30 AQDI003 hybrid incompatibilty
31 AQDJ002 plant height
32 AQDK006 ratooning ability
33 CQB23 plant height
34 CQB24 seed set percent
35 AQGI207 total biomass yield
36 AQFP037 culm length
37 AQE031 grain yield per plant
38 AQCO013 spikelet fertility
39 AQCP013 spikelet fertility
40 AQEK013 iron sensitivity
41 AQBI005 pollen fertility

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0007134 A vegetative growth (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000003 whole plant (+)
2 PO:0008037 seedling (+)
3 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Ramegowda Venkategowda; Basu Supratim; Krishnan Arjun; Pereira Andy; Rice GROWTH UNDER DROUGHT KINASE Is Required for Drought Tolerance and Grain Yield under Normal and Drought Stress Conditions. Plant physiology 2014:166
PMID [25209982]


2  Fukao Takeshi; Yeung Elaine; Bailey-Serres Julia; The submergence tolerance gene, SUB1A, delays leaf senescence under prolonged darkness through hormonal regulation in rice. Plant Physiology 2012:
PMID [23073696]


3  Oh Se-Jun; Kim Youn Shic; Kwon Chang-Woo; Park Hye Kyong; Jeong Jin Seo; Kim Ju-Kon; Overexpression of the transcription factor AP37 in rice improves grain yield under drought conditions. Plant Physiology 2009:150
PMID [19429605]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India