Rice gene details
Searching for LOC_Os07g36740 [CSLF4 - cellulose synthase-like family F; beta1,3;1,4 glucan synthase ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os07g36740.1 890 74 877 PF03552.6 Cellulose_synt
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -5
N22InfloresenceFC
  4
N22 Root FC
  -441
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
  1
IR64 Root FC
  -15

Functional details
Molecular Function
Not found
1 GO:0016740 transferase activity (RGAP)
Biological process
Not found
1 GO:0006950 response to stress (RGAP)
2 GO:0009628 response to abiotic stimulus (RGAP)
3 GO:0009058 biosynthetic process (RGAP)
4 GO:0005975 carbohydrate metabolic process (RGAP)
5 GO:0009653 anatomical structure morphogenesis (RGAP)
6 GO:0030154 cell differentiation (RGAP)
7 GO:0007275 multicellular organismal development (RGAP)
8 GO:0016049 cell growth (RGAP)
9 GO:0009987 cellular process (RGAP)
Cellular component
Not found
1 GO:0016020 membrane (RGAP)
2 GO:0005794 Golgi apparatus (RGAP)
3 GO:0005886 plasma membrane (RGAP)

Environment details
Not found

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 PWY-5386 methylglyoxal degradation I

QTL details
S. No. QTL Id QTL Associated Trait
1 AQGD029 pericarp color
2 AQGD030 pericarp color
3 AQGD028 pericarp color
4 CQN35 leaf senescence
5 CQN36 leaf senescence
6 CQAS82 panicle length
7 AQEN007 blast disease resistance
8 CQAV3 osmotic adjustment capacity
9 CQAW23 root number
10 CQAX7 plant height
11 CQN17 soluble protein content
12 CQN47 panicle weight
13 AQBM002 callus induction
14 AQAP057 brown planthopper resistance
15 AQFW085 plant height
16 AQFW104 panicle length
17 AQAL036 biomass yield
18 AQAL056 deep root dry weight
19 AQDZ009 culm thickness
20 CQE57 panicle number
21 AQDI003 hybrid incompatibilty
22 AQDJ002 plant height
23 AQDK006 ratooning ability
24 CQB23 plant height
25 CQB24 seed set percent
26 AQE031 grain yield per plant
27 AQCO013 spikelet fertility
28 AQCP013 spikelet fertility
29 AQEK013 iron sensitivity
30 AQBI005 pollen fertility
31 CQE58 specific leaf area
32 AQCK004 seed dormancy
33 CQE59 seed dormancy
34 AQFR021 seedling vigor
35 AQAM028 rhizome branching angle
36 AQAM029 rhizome length
37 AQAM030 rhizome internode length

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009005 root (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Wang Suikang; Xu Yanxia; Li Zhilan; Zhang Saina; Lim Jae-Min; Lee Kyun Oh; Li Chuanyou; Qian Qian; Jiang Dean; Qi Yanhua; OsMOGS is required for N-glycan formation and auxin-mediated root development in rice (Oryza sativa L.). The Plant journal : for cell and molecular biology 2014:
PMID [24597623]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India