Rice gene details
Searching for LOC_Os07g37030 [cytochrome b6-f complex iron-sulfur subunit, chloroplast precursor, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os07g37030.1 226 54 92 PF08802.2 CytB6-F_Fe-S
2 LOC_Os07g37030.1 226 110 202 PF00355.18 Rieske
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -1
N22InfloresenceFC
  1
N22 Root FC
  1
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  1
IR64 Root FC
  3

Functional details
Molecular Function
Not found
1 GO:0003674 molecular_function (RGAP)
2 GO:0005515 protein binding (RGAP)
Biological process
Not found
1 GO:0009628 response to abiotic stimulus (RGAP)
2 GO:0006950 response to stress (RGAP)
3 GO:0009607 response to biotic stimulus (RGAP)
4 GO:0006091 generation of precursor metabolites and energy (RGAP)
5 GO:0015979 photosynthesis (RGAP)
Cellular component
Not found
1 GO:0016020 membrane (RGAP)
2 GO:0009536 plastid (RGAP)
3 GO:0009579 thylakoid (RGAP)
4 GO:0005886 plasma membrane (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007235 silicon nutrient regimen (+)
2 EO:0007309 zinc nutrient regimen (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 PWY-3781 aerobic respiration -- electron donor II

QTL details
S. No. QTL Id QTL Associated Trait
1 AQGD029 pericarp color
2 AQGD030 pericarp color
3 AQGD028 pericarp color
4 CQN35 leaf senescence
5 CQN36 leaf senescence
6 CQAS82 panicle length
7 AQEN007 blast disease resistance
8 CQAV3 osmotic adjustment capacity
9 CQAW23 root number
10 CQAX7 plant height
11 CQN17 soluble protein content
12 CQN47 panicle weight
13 AQBM002 callus induction
14 AQAP057 brown planthopper resistance
15 AQFW085 plant height
16 AQFW104 panicle length
17 AQAL036 biomass yield
18 AQAL056 deep root dry weight
19 AQDZ009 culm thickness
20 CQE57 panicle number
21 AQDI003 hybrid incompatibilty
22 AQDJ002 plant height
23 AQDK006 ratooning ability
24 CQB23 plant height
25 CQB24 seed set percent
26 AQE031 grain yield per plant
27 AQCO013 spikelet fertility
28 AQCP013 spikelet fertility
29 AQEK013 iron sensitivity
30 AQBI005 pollen fertility
31 CQE58 specific leaf area
32 AQCK004 seed dormancy
33 CQE59 seed dormancy
34 AQFR021 seedling vigor
35 AQAM028 rhizome branching angle
36 AQAM029 rhizome length
37 AQAM030 rhizome internode length

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0008037 seedling (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Song Alin; Li Ping; Fan Fenliang; Li Zhaojun; Liang Yongchao; The effect of Silicon on photosynthesis and expression of its relevant genes in rice (Oryza sativa L.) under high-zinc stress. PloS one 2014:9
PMID [25426937]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India