|
Searching for LOC_Os07g37250
[THYLAKOID FORMATION1, chloroplast precursor, putative, expressed ] |
|
|
Basic information [Interpro DB] |
Graphical representation of the protein domains |
S. No. |
Locus Id |
Protein Length |
Doman Start |
Domain End |
Interpro ID |
Domain Name |
1 |
LOC_Os07g37250.1 |
288 |
23 |
33 |
|
seg |
2 |
LOC_Os07g37250.1 |
288 |
34 |
51 |
|
seg |
3 |
LOC_Os07g37250.1 |
288 |
56 |
262 |
IPR017499 |
PS_II_psb29: photosystem II biogenesis pr |
4 |
LOC_Os07g37250.1 |
288 |
237 |
268 |
|
coiled-coil |
5 |
LOC_Os07g37250.1 |
288 |
248 |
267 |
|
seg |
|
The basic information is from RGAP and Pfam/InterPro databases |
|
|
Gene model (download) 
IR64 N22
|
Gene Expression
(RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC |
|
N22InfloresenceFC |
|
N22 Root FC |
|
IR64 Flag-leaf FC |
|
IR64InfloresenceFC |
|
IR64 Root FC |
|
|
|
Functional details
Molecular Function
S. No. |
GO Id |
GO Description |
1 |
GO:0003674 |
molecular_function |
(RGAP) |
2 |
GO:0005515 |
protein binding |
(RGAP) |
|
Biological process
Cellular component
|
Environment details
S. No. |
EO Id |
EO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
EO:0007075 |
high light intensity regimen |
(+) |
2 |
EO:0007271 |
low light intensity regimen |
(+) |
3 |
MCE:1000203 |
dark regimen |
(+) |
|
Metabolic Pathway details
QTL details
|
Plant developmental stage / tissue details
Plant development stage
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
PO:0007013 |
BO.03 late boot stage |
(+) |
Plant tissue/organ
Others
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
Not found |
|
Trait details
Physical interaction details
Interaction type: protein-protein
Interaction type: protein-DNA
|
|
Related publications [Sorted by year] |
|
1 |
Yamatani Hiroshi; Sato Yutaka; Masuda Yu; Kato Yusuke; Morita Ryouhei; Fukunaga Kenji; Nagamura Yoshiaki; Nishimura Minoru; Sakamoto Wataru; Tanaka Ayumi; Kusaba Makoto; NYC4, the rice ortholog of Arabidopsis THF1, is involved in the degradation of chlorophyll-protein complexes during leaf senescence. The Plant journal 2013:
PMID [23432654]
 |
|
|
|