Rice gene details
Searching for LOC_Os07g37250 [THYLAKOID FORMATION1, chloroplast precursor, putative, expressed ]
Basic information [Interpro DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Interpro ID Domain Name
1 LOC_Os07g37250.1 288 23 33 seg
2 LOC_Os07g37250.1 288 34 51 seg
3 LOC_Os07g37250.1 288 56 262 IPR017499 PS_II_psb29: photosystem II biogenesis pr
4 LOC_Os07g37250.1 288 237 268 coiled-coil
5 LOC_Os07g37250.1 288 248 267 seg
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -1
N22InfloresenceFC
  2
N22 Root FC
  2
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
  1
IR64 Root FC
  2

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003674 molecular_function (RGAP)
2 GO:0005515 protein binding (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0007165 signal transduction (RGAP)
2 GO:0006810 transport (RGAP)
3 GO:0009987 cellular process (RGAP)
4 GO:0016043 cellular component organization (RGAP)
5 GO:0006091 generation of precursor metabolites and energy (RGAP)
6 GO:0015979 photosynthesis (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0009507 chloroplast  
2 GO:0016020 membrane (RGAP)
3 GO:0009536 plastid (RGAP)
4 GO:0009579 thylakoid (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007075 high light intensity regimen (+)
2 EO:0007271 low light intensity regimen (+)
3 MCE:1000203 dark regimen (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQGD029 pericarp color
2 AQGD030 pericarp color
3 AQGD028 pericarp color
4 CQAS82 panicle length
5 AQEN007 blast disease resistance
6 CQAV3 osmotic adjustment capacity
7 CQAW23 root number
8 CQAX7 plant height
9 CQN47 panicle weight
10 AQBM002 callus induction
11 AQAP057 brown planthopper resistance
12 AQFW085 plant height
13 AQFW104 panicle length
14 AQAL036 biomass yield
15 AQAL056 deep root dry weight
16 AQDI003 hybrid incompatibilty
17 AQDJ002 plant height
18 AQDK006 ratooning ability
19 CQB23 plant height
20 CQB24 seed set percent
21 AQE031 grain yield per plant
22 AQCO013 spikelet fertility
23 AQCP013 spikelet fertility
24 AQEK013 iron sensitivity
25 AQBI005 pollen fertility
26 CQE58 specific leaf area
27 AQCK004 seed dormancy
28 CQE59 seed dormancy
29 AQFR021 seedling vigor
30 AQAM028 rhizome branching angle
31 AQAM029 rhizome length
32 AQAM030 rhizome internode length
33 AQO072 root length

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0007013 BO.03 late boot stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000230 third leaf from top (+)
2 MCP:1000406 second leaf from top (+)
3 MCP:1000412 first leaf from top (-)
4 PO:0009006 shoot system (+)
5 PO:0009025 vascular leaf (+)
6 PO:0020103 flag leaf (-)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000128 PSII effective quantum yield (+)
2 MCT:1000208 leaf whitening (+)
3 MCT:1000477 relative ion leakage (+)
4 TO:0000293 chlorophyll-a content (+)
5 TO:0000295 chlorophyll-b content (+)
6 TO:0002712 stay green trait (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Yamatani Hiroshi; Sato Yutaka; Masuda Yu; Kato Yusuke; Morita Ryouhei; Fukunaga Kenji; Nagamura Yoshiaki; Nishimura Minoru; Sakamoto Wataru; Tanaka Ayumi; Kusaba Makoto; NYC4, the rice ortholog of Arabidopsis THF1, is involved in the degradation of chlorophyll-protein complexes during leaf senescence. The Plant journal 2013:
PMID [23432654]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India